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Getting 'Exon' information from database.
1XJL
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (109 KB)
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(1)
Title
:
STRUCTURE OF HUMAN ANNEXIN A2 IN THE PRESENCE OF CALCIUM IONS
Authors
:
A. Rosengarth, H. Luecke
Date
:
23 Sep 04 (Deposition) - 09 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.59
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Annexins, Calcium-Binding Protein, Lipid-Binding Protein, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Rosengarth, H. Luecke
Annexin A2: Does It Induce Membrane Aggregation By A New Multimeric State Of The Protein?
Annexins V. 1 129 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 14)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
14
Ligand/Ion
CALCIUM ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:50 , VAL A:51 , GLU A:53 , HOH A:349 , HOH A:350 , HOH A:439
BINDING SITE FOR RESIDUE CA A 340
02
AC2
SOFTWARE
LYS A:88 , LEU A:91 , GLU A:96 , HOH A:351 , GLU B:36
BINDING SITE FOR RESIDUE CA A 341
03
AC3
SOFTWARE
MET A:118 , GLY A:120 , GLY A:122 , ASP A:162
BINDING SITE FOR RESIDUE CA A 342
04
AC4
SOFTWARE
GLY A:202 , ARG A:205 , GLY A:207 , GLU A:247 , HOH A:352 , HOH A:437
BINDING SITE FOR RESIDUE CA A 343
05
AC5
SOFTWARE
ARG A:245 , VAL A:248 , GLU A:253 , HOH A:347
BINDING SITE FOR RESIDUE CA A 344
06
AC6
SOFTWARE
SER A:234 , MET A:278 , GLY A:280 , GLY A:282 , ASP A:322 , HOH A:354
BINDING SITE FOR RESIDUE CA A 345
07
AC7
SOFTWARE
GLY B:50 , VAL B:51 , GLU B:53 , HOH B:347 , HOH B:352
BINDING SITE FOR RESIDUE CA B 340
08
AC8
SOFTWARE
LYS B:88 , LEU B:91 , GLU B:96 , HOH B:348 , HOH B:349
BINDING SITE FOR RESIDUE CA B 341
09
AC9
SOFTWARE
MET B:118 , GLY B:120 , GLY B:122 , ASP B:162 , HOH B:353
BINDING SITE FOR RESIDUE CA B 342
10
BC1
SOFTWARE
GLY B:202 , ARG B:205 , GLY B:207 , GLU B:247 , HOH B:354
BINDING SITE FOR RESIDUE CA B 343
11
BC2
SOFTWARE
ARG B:245 , VAL B:248 , GLU B:253 , HOH B:350 , HOH B:351 , HOH B:422
BINDING SITE FOR RESIDUE CA B 344
12
BC3
SOFTWARE
SER B:234 , MET B:278 , GLY B:280 , GLY B:282 , ASP B:322
BINDING SITE FOR RESIDUE CA B 345
13
BC4
SOFTWARE
THR A:123 , GLU A:125 , HOH A:443 , HOH A:444 , HOH A:445
BINDING SITE FOR RESIDUE CA A 346
14
BC5
SOFTWARE
THR B:123 , GLU B:125 , HOH B:450 , HOH B:452 , HOH B:453
BINDING SITE FOR RESIDUE CA B 346
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_012982 (V98L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_012982
V
98
L
ANXA2_HUMAN
Polymorphism
17845226
A/B
V
98
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: ANNEXIN (A:50-102,B:50-102|A:122-174,B:122-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANNEXIN
PS00223
Annexins repeated domain signature.
ANXA2_HUMAN
50-102
122-174
207-259
282-334
8
A:50-102
B:50-102
A:122-174
B:122-174
A:207-259
B:207-259
A:282-334
B:282-334
[
close PROSITE info
]
Exons
(11, 22)
Info
All Exons
Exon 1.5 (A:21-50 | B:21-50)
Exon 1.6 (A:50-81 | B:50-81)
Exon 1.7 (A:82-119 | B:82-119)
Exon 1.8 (A:120-150 | B:120-150)
Exon 1.9 (A:150-176 | B:150-176)
Exon 1.10 (A:177-196 | B:177-196)
Exon 1.11 (A:197-228 | B:197-228)
Exon 1.12 (A:228-260 | B:228-260)
Exon 1.13 (A:260-279 | B:260-279)
Exon 1.14 (A:280-320 | B:280-320)
Exon 1.15c (A:321-339 | B:321-339)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4/1.5
02: Boundary 1.5/1.6
03: Boundary 1.6/1.7
04: Boundary 1.7/1.8
05: Boundary 1.8/1.9
06: Boundary 1.9/1.10
07: Boundary 1.10/1.11
08: Boundary 1.11/1.12
09: Boundary 1.12/1.13
10: Boundary 1.13/1.14
11: Boundary 1.14/1.15c
12: Boundary 1.15c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000396024
1a
ENSE00001403067
chr15:
60690185-60690142
44
ANXA2_HUMAN
-
0
0
-
-
1.3
ENST00000396024
3
ENSE00001523610
chr15:
60682516-60682412
105
ANXA2_HUMAN
-
0
0
-
-
1.4
ENST00000396024
4
ENSE00002155732
chr15:
60678285-60678227
59
ANXA2_HUMAN
1-16
16
0
-
-
1.5
ENST00000396024
5
ENSE00001792486
chr15:
60674640-60674541
100
ANXA2_HUMAN
17-50
34
2
A:21-50
B:21-50
30
30
1.6
ENST00000396024
6
ENSE00001690061
chr15:
60656722-60656628
95
ANXA2_HUMAN
50-81
32
2
A:50-81
B:50-81
32
32
1.7
ENST00000396024
7
ENSE00001608158
chr15:
60653253-60653140
114
ANXA2_HUMAN
82-119
38
2
A:82-119
B:82-119
38
38
1.8
ENST00000396024
8
ENSE00001365712
chr15:
60649435-60649345
91
ANXA2_HUMAN
120-150
31
2
A:120-150
B:120-150
31
31
1.9
ENST00000396024
9
ENSE00001376738
chr15:
60648197-60648118
80
ANXA2_HUMAN
150-176
27
2
A:150-176
B:150-176
27
27
1.10
ENST00000396024
10
ENSE00001387355
chr15:
60646412-60646353
60
ANXA2_HUMAN
177-196
20
2
A:177-196
B:177-196
20
20
1.11
ENST00000396024
11
ENSE00001382815
chr15:
60644675-60644582
94
ANXA2_HUMAN
197-228
32
2
A:197-228
B:197-228
32
32
1.12
ENST00000396024
12
ENSE00001385247
chr15:
60644018-60643923
96
ANXA2_HUMAN
228-260
33
2
A:228-260
B:228-260
33
33
1.13
ENST00000396024
13
ENSE00001388601
chr15:
60643450-60643392
59
ANXA2_HUMAN
260-279
20
2
A:260-279
B:260-279
20
20
1.14
ENST00000396024
14
ENSE00001321115
chr15:
60641396-60641274
123
ANXA2_HUMAN
280-320
41
2
A:280-320
B:280-320
41
41
1.15c
ENST00000396024
15c
ENSE00001851616
chr15:
60639888-60639333
556
ANXA2_HUMAN
321-339
19
2
A:321-339
B:321-339
19
19
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1xjla_ (A:)
1b: SCOP_d1xjlb_ (B:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Annexin
(61)
Superfamily
:
Annexin
(61)
Family
:
Annexin
(56)
Protein domain
:
Annexin II
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1xjla_
A:
1b
d1xjlb_
B:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1xjlA01 (A:21-104)
1b: CATH_1xjlB03 (B:185-264)
1c: CATH_1xjlB01 (B:21-104)
1d: CATH_1xjlA04 (A:266-339)
1e: CATH_1xjlB04 (B:266-339)
1f: CATH_1xjlA02 (A:105-183)
1g: CATH_1xjlB02 (B:105-183)
1h: CATH_1xjlA03 (A:185-264)
View:
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Architectures
(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Annexin V; domain 1
(80)
Homologous Superfamily
:
[code=1.10.220.10, no name defined]
(58)
Human (Homo sapiens)
(22)
1a
1xjlA01
A:21-104
1b
1xjlB03
B:185-264
1c
1xjlB01
B:21-104
1d
1xjlA04
A:266-339
1e
1xjlB04
B:266-339
1f
1xjlA02
A:105-183
1g
1xjlB02
B:105-183
1h
1xjlA03
A:185-264
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
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)
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Asymmetric Unit 1
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