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1XJA
Biol. Unit 3
Info
Asym.Unit (147 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (58 KB)
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(1)
Title
:
APO FORM OF THE Y31V MUTANT DIMERIZATION DOMAIN FRAGMENT OF ESCHERICHIA COLI REGULATORY PROTEIN ARAC
Authors
:
J. E. Weldon, C. Larkin, R. F. Schleif
Date
:
23 Sep 04 (Deposition) - 12 Oct 04 (Release) - 16 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E (2x)
Keywords
:
Transcription Factor, Coiled-Coil, Jelly Roll, Allostery, Arabinose, Carbohydrate Binding, Arac, Transcription
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Reference
:
J. E. Weldon, M. E. Rodgers, C. Larkin, R. F. Schleif
Structure And Properties Of A Truely Apo Form Of Arac Dimerization Domain.
Proteins V. 66 646 2007
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
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No.
Name
Count
Type
Full Name
1
EDO
8
Ligand/Ion
1,2-ETHANEDIOL
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Sites
(5, 5)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC8 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
5: CC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
LEU D:40 , GLY D:77 , ARG E:62
BINDING SITE FOR RESIDUE EDO D 305
2
AC8
SOFTWARE
LEU E:10 , ARG E:38 , HOH E:360
BINDING SITE FOR RESIDUE EDO E 308
3
BC2
SOFTWARE
GLU E:106 , TRP E:107 , TYR E:147 , LEU E:150 , HOH E:335 , HOH E:368 , HOH E:370
BINDING SITE FOR RESIDUE EDO E 312
4
BC3
SOFTWARE
HOH C:357 , GLU E:169
BINDING SITE FOR RESIDUE EDO E 313
5
CC5
SOFTWARE
HOH D:388 , GLU E:87
BINDING SITE FOR RESIDUE EDO E 325
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 5)
Info
All SCOP Domains
1a: SCOP_d1xjaa_ (A:)
1b: SCOP_d1xjab_ (B:)
1c: SCOP_d1xjac_ (C:)
1d: SCOP_d1xjad_ (D:)
1e: SCOP_d1xjae_ (E:)
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Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Regulatory protein AraC
(4)
Family
:
Regulatory protein AraC
(4)
Protein domain
:
Regulatory protein AraC
(4)
Escherichia coli [TaxId: 562]
(4)
1a
d1xjaa_
A:
1b
d1xjab_
B:
1c
d1xjac_
C:
1d
d1xjad_
D:
1e
d1xjae_
E:
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CATH Domains
(1, 5)
Info
all CATH domains
1a: CATH_1xjaE00 (E:7-169)
1b: CATH_1xjaA00 (A:8-172)
1c: CATH_1xjaD00 (D:7-171)
1d: CATH_1xjaC00 (C:7-175)
1e: CATH_1xjaB00 (B:15-168)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.280, no name defined]
(4)
Escherichia coli. Organism_taxid: 562.
(3)
1a
1xjaE00
E:7-169
1b
1xjaA00
A:8-172
1c
1xjaD00
D:7-171
1d
1xjaC00
C:7-175
1e
1xjaB00
B:15-168
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Pfam Domains
(1, 5)
Info
all PFAM domains
1a: PFAM_AraC_binding_1xjaE01 (E:20-160)
1b: PFAM_AraC_binding_1xjaE02 (E:20-160)
1c: PFAM_AraC_binding_1xjaE03 (E:20-160)
1d: PFAM_AraC_binding_1xjaE04 (E:20-160)
1e: PFAM_AraC_binding_1xjaE05 (E:20-160)
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Clan
:
Cupin
(179)
Family
:
AraC_binding
(1)
Escherichia coli (strain K12)
(1)
1a
AraC_binding-1xjaE01
E:20-160
1b
AraC_binding-1xjaE02
E:20-160
1c
AraC_binding-1xjaE03
E:20-160
1d
AraC_binding-1xjaE04
E:20-160
1e
AraC_binding-1xjaE05
E:20-160
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Asym.Unit (147 KB)
Header - Asym.Unit
Biol.Unit 1 (56 KB)
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Biol.Unit 2 (61 KB)
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Biol.Unit 3 (58 KB)
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