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1XIN
Asym. Unit
Info
Asym.Unit (271 KB)
Biol.Unit 1 (265 KB)
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Title
:
PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES
Authors
:
J. Janin
Date
:
06 Apr 92 (Deposition) - 15 Jul 93 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Isomerase(Intramolecular Oxidoreductse)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Jenkins, J. Janin, F. Rey, M. Chiadmi, H. Van Tilbeurgh, I. Lasters, M. De Maeyer, D. Van Belle, S. J. Wodak, M. Lauwereys, P. Stanssens, G. Matthyssens, A. M. Lambeir
Protein Engineering Of Xylose (Glucose) Isomerase From Actinoplanes Missouriensis. 1. Crystallography And Site-Directed Mutagenesis Of Metal Binding Sites.
Biochemistry V. 31 5449 1992
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
2a: D-XYLITOL (XYLa)
2b: D-XYLITOL (XYLb)
2c: D-XYLITOL (XYLc)
2d: D-XYLITOL (XYLd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
4
Ligand/Ion
MAGNESIUM ION
2
XYL
4
Ligand/Ion
D-XYLITOL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:16 , HIS A:54 , TRP A:137 , GLU A:181 , LYS A:183 , GLU A:217 , ASP A:245 , ASP A:255 , ASP A:292 , MG A:395 , HOH A:454 , HOH A:455 , HOH A:536 , HOH A:586
BINDING SITE FOR RESIDUE XYL A 397
2
AC2
SOFTWARE
PHE A:26 , TRP B:16 , HIS B:54 , TRP B:137 , GLU B:181 , LYS B:183 , GLU B:217 , ASP B:245 , ASP B:255 , ASP B:292 , MG B:395 , HOH B:461 , HOH B:462 , HOH B:541 , HOH B:593 , HOH B:604
BINDING SITE FOR RESIDUE XYL B 397
3
AC3
SOFTWARE
TRP C:16 , HIS C:54 , PHE C:94 , TRP C:137 , GLU C:181 , LYS C:183 , GLU C:217 , ASP C:245 , ASP C:255 , ASP C:292 , MG C:395 , HOH C:469 , HOH C:470 , HOH C:552 , HOH C:608 , HOH C:609
BINDING SITE FOR RESIDUE XYL C 397
4
AC4
SOFTWARE
TRP D:16 , HIS D:54 , TRP D:137 , GLU D:181 , LYS D:183 , GLU D:217 , ASP D:245 , ASP D:255 , ASP D:292 , MG D:395 , HOH D:475 , HOH D:476 , HOH D:556 , HOH D:617
BINDING SITE FOR RESIDUE XYL D 397
5
AC5
SOFTWARE
GLU A:181 , GLU A:217 , ASP A:245 , ASP A:292 , XYL A:397
BINDING SITE FOR RESIDUE MG A 395
6
AC6
SOFTWARE
GLU B:181 , GLU B:217 , ASP B:245 , ASP B:292 , XYL B:397
BINDING SITE FOR RESIDUE MG B 395
7
AC7
SOFTWARE
GLU C:181 , GLU C:217 , ASP C:245 , ASP C:292 , XYL C:397
BINDING SITE FOR RESIDUE MG C 395
8
AC8
SOFTWARE
GLU D:181 , GLU D:217 , ASP D:245 , ASP D:292 , XYL D:397
BINDING SITE FOR RESIDUE MG D 395
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: XYLOSE_ISOMERASE (A:4-390,B:4-390,C:4-390,D:4-390)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
XYLOSE_ISOMERASE
PS51415
Xylose isomerase family profile.
XYLA_ACTM4
4-390
4
A:4-390
B:4-390
C:4-390
D:4-390
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1xina_ (A:)
1b: SCOP_d1xinb_ (B:)
1c: SCOP_d1xinc_ (C:)
1d: SCOP_d1xind_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Xylose isomerase-like
(125)
Family
:
Xylose isomerase
(97)
Protein domain
:
D-xylose isomerase
(82)
Actinoplanes missouriensis [TaxId: 1866]
(14)
1a
d1xina_
A:
1b
d1xinb_
B:
1c
d1xinc_
C:
1d
d1xind_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1xinA00 (A:3-394)
1b: CATH_1xinB00 (B:3-394)
1c: CATH_1xinC00 (C:3-394)
1d: CATH_1xinD00 (D:3-394)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Divalent-metal-dependent TIM barrel enzymes
(98)
Actinoplanes missouriensis. Organism_taxid: 1866
(13)
1a
1xinA00
A:3-394
1b
1xinB00
B:3-394
1c
1xinC00
C:3-394
1d
1xinD00
D:3-394
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Pfam Domains
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Asymmetric Unit 1
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