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1XIC
Asym. Unit
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Asym.Unit (73 KB)
Biol.Unit 1 (265 KB)
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(1)
Title
:
MODES OF BINDING SUBSTRATES AND THEIR ANALOGUES TO THE ENZYME D-XYLOSE ISOMERASE
Authors
:
H. L. Carrell, J. P. Glusker
Date
:
07 Mar 94 (Deposition) - 22 Jun 94 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Isomerase(Intramolecular Oxidoreductase)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. L. Carrell, H. Hoier, J. P. Glusker
Modes Of Binding Substrates And Their Analogues To The Enzyme D-Xylose Isomerase.
Acta Crystallogr. , Sect. D V. 50 113 1994
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
2a: D-XYLOSE (LINEAR FORM) (XLSa)
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No.
Name
Count
Type
Full Name
1
MN
2
Ligand/Ion
MANGANESE (II) ION
2
XLS
1
Ligand/Ion
D-XYLOSE (LINEAR FORM)
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Sites
(3, 3)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:16 , HIS A:54 , PHE A:94 , VAL A:135 , TRP A:137 , GLU A:181 , GLU A:217 , HIS A:220 , ASP A:245 , ASP A:287 , MN A:391 , HOH A:408 , HOH A:409 , HOH A:565 , HOH A:585
BINDING SITE FOR RESIDUE XLS A 389
2
AC2
SOFTWARE
GLU A:217 , HIS A:220 , ASP A:255 , ASP A:257 , HOH A:409
BINDING SITE FOR RESIDUE MN A 390
3
AC3
SOFTWARE
GLU A:181 , GLU A:217 , ASP A:245 , ASP A:287 , XLS A:389
BINDING SITE FOR RESIDUE MN A 391
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
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1: XYLOSE_ISOMERASE (A:4-383)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
XYLOSE_ISOMERASE
PS51415
Xylose isomerase family profile.
XYLA_STRRU
4-383
1
A:4-383
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d1xica_ (A:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Xylose isomerase-like
(125)
Family
:
Xylose isomerase
(97)
Protein domain
:
D-xylose isomerase
(82)
Streptomyces rubiginosus [TaxId: 1929]
(31)
1a
d1xica_
A:
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CATH Domains
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1a: CATH_1xicA00 (A:3-387)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Divalent-metal-dependent TIM barrel enzymes
(98)
Streptomyces rubiginosus. Organism_taxid: 1929
(21)
1a
1xicA00
A:3-387
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_AP_endonuc_2_1xicA01 (A:40-265)
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Clan
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TIM_barrel
(694)
Family
:
AP_endonuc_2
(72)
Streptomyces rubiginosus
(22)
1a
AP_endonuc_2-1xicA01
A:40-265
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