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1XI9
Biol. Unit 3
Info
Asym.Unit (253 KB)
Biol.Unit 1 (246 KB)
Biol.Unit 2 (126 KB)
Biol.Unit 3 (126 KB)
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(1)
Title
:
ALANINE AMINOTRANSFERASE FROM PYROCOCCUS FURIOSUS PFU-1397077-001
Authors
:
W. Zhou, W. Tempel, A. Shah, L. Chen, Z. -J. Liu, D. Lee, D. Lin, S. -H. Chan P. S. Brereton, M. Izumi, F. E. Jenney Jr. , H. -S. Lee, F. L. Poole Ii, C F. J. Sugar, W. B. Arendall Iii, J. S. Richardson, D. C. Richardson, J. M. W. W. Adams, B. -C. Wang, Southeast Collaboratory For Structura Genomics (Secsg)
Date
:
21 Sep 04 (Deposition) - 23 Nov 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Alanine Aminotransferase, Pyrococcus Furiosus, Southeast Collaboratory For Structural Genomics, Secsg, Hyperthermophile, Protein Structure Initiative, Psi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
W. Zhou, W. Tempel, A. Shah, L. Chen, Z. -J. Liu, D. Lee, D. Lin, S. -H. Chang, P. S. Brereton, M. Izumi, F. E. Jenney Jr. , H. -S. Lee, F. L. Poole Ii, C. Shah, F. J. Sugar, W. B. Arendall Iii, J. S. Richardson, D. C. Richardson, J. P. Rose, M. W. W. Adams, B. -C. Wang, Southeast Collaboratory For Structural Genomics
Alanine Aminotransferase From Pyrococcus Furiosus Pfu-1397077-001
To Be Published
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
1b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
1c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
1d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ALA C:101 , VAL C:102 , THR C:103 , TYR C:127 , ILE C:173 , ASN C:177 , ASP C:205 , ILE C:207 , TYR C:208 , SER C:236 , LYS C:237 , ARG C:245 , HOH C:531 , TYR D:66
BINDING SITE FOR RESIDUE PLP C 501
2
AC4
SOFTWARE
TYR C:66 , ALA D:101 , VAL D:102 , THR D:103 , TYR D:127 , ILE D:173 , ASN D:177 , ASP D:205 , ILE D:207 , TYR D:208 , SER D:236 , LYS D:237 , ARG D:245 , HOH D:434
BINDING SITE FOR RESIDUE PLP D 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1xi9a_ (A:)
1b: SCOP_d1xi9b_ (B:)
1c: SCOP_d1xi9c_ (C:)
1d: SCOP_d1xi9d_ (D:)
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Protein Domains
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
AAT-like
(184)
Protein domain
:
Putative alanine aminotransferase
(1)
Pyrococcus furiosus [TaxId: 2261]
(1)
1a
d1xi9a_
A:
1b
d1xi9b_
B:
1c
d1xi9c_
C:
1d
d1xi9d_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1xi9A02 (A:50-291)
1b: CATH_1xi9B02 (B:50-291)
1c: CATH_1xi9C02 (C:66-290)
1d: CATH_1xi9D02 (D:66-290)
2a: CATH_1xi9B01 (B:2-49,B:292-395)
2b: CATH_1xi9A01 (A:1-49,A:292-395)
2c: CATH_1xi9D01 (D:2-65,D:291-395)
2d: CATH_1xi9C01 (C:3-65,C:291-395)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Pyrococcus furiosus dsm 3638. Organism_taxid: 186497. Strain: dsm 3638.
(1)
1a
1xi9A02
A:50-291
1b
1xi9B02
B:50-291
1c
1xi9C02
C:66-290
1d
1xi9D02
D:66-290
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Pyrococcus furiosus dsm 3638. Organism_taxid: 186497. Strain: dsm 3638.
(1)
2a
1xi9B01
B:2-49,B:292-395
2b
1xi9A01
A:1-49,A:292-395
2c
1xi9D01
D:2-65,D:291-395
2d
1xi9C01
C:3-65,C:291-395
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Aminotran_1_2_1xi9D01 (D:30-388)
1b: PFAM_Aminotran_1_2_1xi9D02 (D:30-388)
1c: PFAM_Aminotran_1_2_1xi9D03 (D:30-388)
1d: PFAM_Aminotran_1_2_1xi9D04 (D:30-388)
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Clan
:
PLP_aminotran
(240)
Family
:
Aminotran_1_2
(77)
Pyrococcus furiosus
(1)
1a
Aminotran_1_2-1xi9D01
D:30-388
1b
Aminotran_1_2-1xi9D02
D:30-388
1c
Aminotran_1_2-1xi9D03
D:30-388
1d
Aminotran_1_2-1xi9D04
D:30-388
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Asymmetric Unit 1
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Asym.Unit (253 KB)
Header - Asym.Unit
Biol.Unit 1 (246 KB)
Header - Biol.Unit 1
Biol.Unit 2 (126 KB)
Header - Biol.Unit 2
Biol.Unit 3 (126 KB)
Header - Biol.Unit 3
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