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1XHL
Asym. Unit
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Asym.Unit (96 KB)
Biol.Unit 1 (178 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE TROPINONE REDUCTASE-II FROM CAENORHABDITIS ELEGANS WITH COFACTOR AND SUBSTRATE
Authors
:
N. Schormann, E. Karpova, J. Zhou, Y. Zhang, J. Symersky, R. Bunzel, W. - A. Arabshahi, S. Qiu, C. -H. Luan, R. Gray, M. Carson, J. Tsao, M. Luo, D. S. Lu, G. Lin, D. Luo, Z. Cao, S. Li, A. Mckinstry, Q. Shang, Y. -J. Chen, T L. Nagy, L. Delucas, Southeast Collaboratory For Structural Gen (Secsg)
Date
:
20 Sep 04 (Deposition) - 28 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Parallel Beta-Sheet Of Seven Strands In The Order 3214567, Three Alpha-Helices On Either Side Of Beta-Sheet, Seventh Alpha-Helix On Top Of Beta-Sheet, Structural Genomics, Protein Structure Initiative, Scsg, Psi, Southeast Collaboratory For Structural Genomics, Secsg, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
N. Schormann, E. Karpova, J. Zhou, Y. Zhang, J. Symersky, R. Bunzel, W. -Y. Huang, A. Arabshahi, S. Qiu, C. -H. Luan, R. Gray, M. Carson, J. Tsao, M. Luo, D. Johnson, S. Lu, G. Lin, D. Luo, Z. Cao, S. Li, A. Mckinstry, Q. Shang, Y. -J. Chen, T. Bray, L. Nagy, L. Delucas
Crystal Structure Of Putative Tropinone Reductase-Ii From Caenorhabditis Elegans With Cofactor And Substrate
To Be Published
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
1b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
2a: 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-... (TNEa)
2b: 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-... (TNEb)
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No.
Name
Count
Type
Full Name
1
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
2
TNE
2
Ligand/Ion
8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-3-ONE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:13 , SER A:14 , SER A:15 , ASN A:16 , GLY A:17 , ILE A:18 , GLY A:37 , ARG A:38 , ASN A:39 , ARG A:42 , ALA A:65 , ASP A:66 , VAL A:67 , ASN A:93 , ALA A:94 , GLY A:95 , LEU A:118 , SER A:145 , SER A:146 , TYR A:160 , LYS A:164 , PRO A:190 , GLY A:191 , ALA A:192 , VAL A:193 , THR A:195 , GLY A:196 , PHE A:197 , TNE A:1279 , HOH A:1291 , HOH A:1316 , HOH A:1322 , HOH A:1325
BINDING SITE FOR RESIDUE NDP A 1278
2
AC2
SOFTWARE
GLY B:13 , SER B:14 , SER B:15 , ASN B:16 , GLY B:17 , ILE B:18 , GLY B:37 , ARG B:38 , ASN B:39 , ARG B:42 , ALA B:65 , ASP B:66 , VAL B:67 , ASN B:93 , ALA B:94 , GLY B:95 , LEU B:118 , VAL B:144 , SER B:145 , SER B:146 , TYR B:160 , LYS B:164 , PRO B:190 , GLY B:191 , ALA B:192 , VAL B:193 , THR B:195 , GLY B:196 , PHE B:197 , TNE B:2279 , HOH B:2280 , HOH B:2282 , HOH B:2291 , HOH B:2311 , HOH B:2317 , HOH B:2385
BINDING SITE FOR RESIDUE NDP B 2278
3
AC3
SOFTWARE
TYR A:157 , GLY A:191 , NDP A:1278 , HOH A:1280 , HOH A:1368
BINDING SITE FOR RESIDUE TNE A 1279
4
AC4
SOFTWARE
TYR B:157 , ALA B:192 , PHE B:197 , NDP B:2278
BINDING SITE FOR RESIDUE TNE B 2279
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1xhla_ (A:)
1b: SCOP_d1xhlb_ (B:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Hypothetical protein F25D1.5
(1)
Nematode (Caenorhabditis elegans) [TaxId: 6239]
(1)
1a
d1xhla_
A:
1b
d1xhlb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1xhlA00 (A:3-276)
1b: CATH_1xhlB00 (B:3-276)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Caenorhabditis elegans. Organism_taxid: 6239.
(3)
1a
1xhlA00
A:3-276
1b
1xhlB00
B:3-276
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_adh_short_C2_1xhlB01 (B:12-261)
1b: PFAM_adh_short_C2_1xhlB02 (B:12-261)
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Clan
:
NADP_Rossmann
(1239)
Family
:
adh_short_C2
(98)
Caenorhabditis elegans
(3)
1a
adh_short_C2-1xhlB01
B:12-261
1b
adh_short_C2-1xhlB02
B:12-261
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Asymmetric Unit 1
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