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1XFY
Biol. Unit 5
Info
Asym.Unit (883 KB)
Biol.Unit 1 (153 KB)
Biol.Unit 2 (153 KB)
Biol.Unit 3 (153 KB)
Biol.Unit 4 (153 KB)
Biol.Unit 5 (153 KB)
Biol.Unit 6 (154 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ANTHRAX EDEMA FACTOR (EF) IN COMPLEX WITH CALMODULIN
Authors
:
Y. Shen, N. L. Zhukovskaya, Q. Guo, J. Florian, W. J. Tang
Date
:
15 Sep 04 (Deposition) - 03 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,O,P,Q,R,S,T
Biol. Unit 1: A,O (1x)
Biol. Unit 2: B,P (1x)
Biol. Unit 3: C,Q (1x)
Biol. Unit 4: D,R (1x)
Biol. Unit 5: E,S (1x)
Biol. Unit 6: F,T (1x)
Keywords
:
Protein-Protein Interaction, Lyase/Metal Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Shen, N. L. Zhukovskaya, Q. Guo, J. Florian, W. J. Tang
Calcium-Independent Calmodulin Binding And Two-Metal-Ion Catalytic Mechanism Of Anthrax Edema Factor.
Embo J. V. 24 929 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
View:
Select:
Label:
Sorry, no Info available
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]
Sites
(3, 3)
Info
All Sites
1: AC5 (SOFTWARE)
2: BC6 (SOFTWARE)
3: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
ASP E:491 , ASP E:493 , HIS E:577
BINDING SITE FOR RESIDUE MG E 904
2
BC6
SOFTWARE
ASP S:129 , ASP S:131 , ASP S:133 , GLN S:135 , GLU S:140
BINDING SITE FOR RESIDUE CA S 809
3
BC7
SOFTWARE
ASP S:93 , ASP S:95 , ASN S:97 , TYR S:99 , GLU S:104
BINDING SITE FOR RESIDUE CA S 810
[
close Site info
]
SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_069222 (N53I, chain S, )
02: VAR_048585 (M72T, chain S, )
03: VAR_073275 (F89L, chain S, )
04: VAR_073276 (D95V, chain S, )
05: VAR_073277 (N97I, chain S, )
06: VAR_069223 (N97S, chain S, )
07: VAR_073278 (D129G, chain S, )
08: VAR_073279 (D131E, chain S, )
09: VAR_073280 (D133H, chain S, )
10: VAR_073281 (Q135P, chain S, )
11: VAR_073282 (F141L, chain S, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_069222
N
54
I
CALM_HUMAN
Disease (CPVT4)
---
S
N
53
I
02
UniProt
VAR_048585
M
73
T
CALM_HUMAN
Polymorphism
41389749
S
M
72
T
03
UniProt
VAR_073275
F
90
L
CALM_HUMAN
Disease (LQT14)
---
S
F
89
L
04
UniProt
VAR_073276
D
96
V
CALM_HUMAN
Disease (LQT15)
---
S
D
95
V
05
UniProt
VAR_073277
N
98
I
CALM_HUMAN
Disease (LQT15)
---
S
N
97
I
06
UniProt
VAR_069223
N
98
S
CALM_HUMAN
Disease (CPVT4)
---
S
N
97
S
07
UniProt
VAR_073278
D
130
G
CALM_HUMAN
Disease (LQT14)
---
S
D
129
G
08
UniProt
VAR_073279
D
132
E
CALM_HUMAN
Disease (LQT15)
---
S
D
131
E
09
UniProt
VAR_073280
D
134
H
CALM_HUMAN
Disease (LQT15)
---
S
D
133
H
10
UniProt
VAR_073281
Q
136
P
CALM_HUMAN
Disease (LQT15)
---
S
Q
135
P
11
UniProt
VAR_073282
F
142
L
CALM_HUMAN
Disease (LQT14)
---
S
F
141
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (S:7-42,S:43-78,S:80-115,S:116-148)
2: EF_HAND_1 (S:20-32,S:56-68,S:93-105,S:129-141)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM1_HUMAN
8-43
44-79
81-116
117-149
4
-
-
-
-
S:7-42
-
-
-
-
-
S:43-78
-
-
-
-
-
S:80-115
-
-
-
-
-
S:116-148
-
CALM2_HUMAN
8-43
44-79
81-116
117-149
4
-
-
-
-
S:7-42
-
-
-
-
-
S:43-78
-
-
-
-
-
S:80-115
-
-
-
-
-
S:116-148
-
CALM3_HUMAN
8-43
44-79
81-116
117-149
4
-
-
-
-
S:7-42
-
-
-
-
-
S:43-78
-
-
-
-
-
S:80-115
-
-
-
-
-
S:116-148
-
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM1_HUMAN
21-33
57-69
94-106
130-142
4
-
-
-
-
S:20-32
-
-
-
-
-
S:56-68
-
-
-
-
-
S:93-105
-
-
-
-
-
S:129-141
-
CALM2_HUMAN
21-33
57-69
94-106
130-142
4
-
-
-
-
S:20-32
-
-
-
-
-
S:56-68
-
-
-
-
-
S:93-105
-
-
-
-
-
S:129-141
-
CALM3_HUMAN
21-33
57-69
94-106
130-142
4
-
-
-
-
S:20-32
-
-
-
-
-
S:56-68
-
-
-
-
-
S:93-105
-
-
-
-
-
S:129-141
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1xfyo1 (O:3-75)
1b: SCOP_d1xfyq1 (Q:3-75)
1c: SCOP_d1xfyr1 (R:3-75)
1d: SCOP_d1xfys1 (S:3-75)
1e: SCOP_d1xfyt1 (T:3-75)
1f: SCOP_d1xfyp1 (P:3-75)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d1xfyo1
O:3-75
1b
d1xfyq1
Q:3-75
1c
d1xfyr1
R:3-75
1d
d1xfys1
S:3-75
1e
d1xfyt1
T:3-75
1f
d1xfyp1
P:3-75
[
close SCOP info
]
CATH Domains
(2, 18)
Info
all CATH domains
1a: CATH_1xfyA01 (A:64-291)
1b: CATH_1xfyB01 (B:64-291)
1c: CATH_1xfyC01 (C:64-291)
1d: CATH_1xfyD01 (D:64-291)
1e: CATH_1xfyE01 (E:64-291)
1f: CATH_1xfyF01 (F:64-291)
2a: CATH_1xfyO02 (O:79-148)
2b: CATH_1xfyP02 (P:79-148)
2c: CATH_1xfyQ02 (Q:79-148)
2d: CATH_1xfyR02 (R:79-148)
2e: CATH_1xfyS02 (S:79-148)
2f: CATH_1xfyT02 (T:79-148)
2g: CATH_1xfyO01 (O:18-78)
2h: CATH_1xfyP01 (P:18-78)
2i: CATH_1xfyQ01 (Q:18-78)
2j: CATH_1xfyR01 (R:18-78)
2k: CATH_1xfyS01 (S:18-78)
2l: CATH_1xfyT01 (T:18-78)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Bacillus anthracis. Organism_taxid: 1392.
(15)
1a
1xfyA01
A:64-291
1b
1xfyB01
B:64-291
1c
1xfyC01
C:64-291
1d
1xfyD01
D:64-291
1e
1xfyE01
E:64-291
1f
1xfyF01
F:64-291
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Bacillus anthracis. Organism_taxid: 1392.
(10)
2a
1xfyO02
O:79-148
2b
1xfyP02
P:79-148
2c
1xfyQ02
Q:79-148
2d
1xfyR02
R:79-148
2e
1xfyS02
S:79-148
2f
1xfyT02
T:79-148
2g
1xfyO01
O:18-78
2h
1xfyP01
P:18-78
2i
1xfyQ01
Q:18-78
2j
1xfyR01
R:18-78
2k
1xfyS01
S:18-78
2l
1xfyT01
T:18-78
[
close CATH info
]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_ATLF_1xfyF01 (F:64-277)
1b: PFAM_ATLF_1xfyF02 (F:64-277)
1c: PFAM_ATLF_1xfyF03 (F:64-277)
1d: PFAM_ATLF_1xfyF04 (F:64-277)
1e: PFAM_ATLF_1xfyF05 (F:64-277)
1f: PFAM_ATLF_1xfyF06 (F:64-277)
2a: PFAM_Anthrax_toxA_1xfyF07 (F:293-472)
2b: PFAM_Anthrax_toxA_1xfyF08 (F:293-472)
2c: PFAM_Anthrax_toxA_1xfyF09 (F:293-472)
2d: PFAM_Anthrax_toxA_1xfyF10 (F:293-472)
2e: PFAM_Anthrax_toxA_1xfyF11 (F:293-472)
2f: PFAM_Anthrax_toxA_1xfyF12 (F:293-472)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: ATLF]
(15)
Family
:
ATLF
(15)
Bacillus anthracis
(15)
1a
ATLF-1xfyF01
F:64-277
1b
ATLF-1xfyF02
F:64-277
1c
ATLF-1xfyF03
F:64-277
1d
ATLF-1xfyF04
F:64-277
1e
ATLF-1xfyF05
F:64-277
1f
ATLF-1xfyF06
F:64-277
Clan
:
no clan defined [family: Anthrax_toxA]
(16)
Family
:
Anthrax_toxA
(16)
Bacillus anthracis
(13)
2a
Anthrax_toxA-1xfyF07
F:293-472
2b
Anthrax_toxA-1xfyF08
F:293-472
2c
Anthrax_toxA-1xfyF09
F:293-472
2d
Anthrax_toxA-1xfyF10
F:293-472
2e
Anthrax_toxA-1xfyF11
F:293-472
2f
Anthrax_toxA-1xfyF12
F:293-472
[
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