PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1XFX
Asym. Unit
Info
Asym.Unit (889 KB)
Biol.Unit 1 (155 KB)
Biol.Unit 2 (154 KB)
Biol.Unit 3 (154 KB)
Biol.Unit 4 (154 KB)
Biol.Unit 5 (154 KB)
Biol.Unit 6 (155 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF ANTHRAX EDEMA FACTOR (EF) IN COMPLEX WITH CALMODULIN IN THE PRESENCE OF 10 MILLIMOLAR EXOGENOUSLY ADDED CALCIUM CHLORIDE
Authors
:
Y. Shen, N. L. Zhukovskaya, Q. Guo, J. Florian, W. J. Tang
Date
:
15 Sep 04 (Deposition) - 03 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,O,P,Q,R,S,T
Biol. Unit 1: A,O (1x)
Biol. Unit 2: B,P (1x)
Biol. Unit 3: C,Q (1x)
Biol. Unit 4: D,R (1x)
Biol. Unit 5: E,S (1x)
Biol. Unit 6: F,T (1x)
Keywords
:
Protein-Protein Interaction, Lyase/Metal Binding Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Shen, N. L. Zhukovskaya, Q. Guo, J. Florian, W. J. Tang
Calcium-Independent Calmodulin Binding And Two-Metal-Ion Catalytic Mechanism Of Anthrax Edema Factor.
Embo J. V. 24 929 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 84)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
1u: CALCIUM ION (CAu)
1v: CALCIUM ION (CAv)
1w: CALCIUM ION (CAw)
1x: CALCIUM ION (CAx)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3aw: SELENOMETHIONINE (MSEaw)
3ax: SELENOMETHIONINE (MSEax)
3ay: SELENOMETHIONINE (MSEay)
3az: SELENOMETHIONINE (MSEaz)
3b: SELENOMETHIONINE (MSEb)
3ba: SELENOMETHIONINE (MSEba)
3bb: SELENOMETHIONINE (MSEbb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
24
Ligand/Ion
CALCIUM ION
2
MG
6
Ligand/Ion
MAGNESIUM ION
3
MSE
54
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:491 , ASP A:493 , HIS A:577
BINDING SITE FOR RESIDUE MG A 900
02
AC2
SOFTWARE
ASP B:491 , ASP B:493 , HIS B:577
BINDING SITE FOR RESIDUE MG B 901
03
AC3
SOFTWARE
ASP C:491 , ASP C:493 , HIS C:577
BINDING SITE FOR RESIDUE MG C 902
04
AC4
SOFTWARE
ASP D:491 , ASP D:493 , HIS D:577
BINDING SITE FOR RESIDUE MG D 903
05
AC5
SOFTWARE
ASP E:491 , ASP E:493 , HIS E:577
BINDING SITE FOR RESIDUE MG E 904
06
AC6
SOFTWARE
ASP F:491 , ASP F:493 , HIS F:577
BINDING SITE FOR RESIDUE MG F 905
07
AC7
SOFTWARE
ASP O:20 , ASP O:22 , ASP O:24 , THR O:26
BINDING SITE FOR RESIDUE CA O 701
08
AC8
SOFTWARE
VAL O:55 , ASP O:56 , ALA O:57 , ASP O:58 , GLY O:59 , GLY O:61 , THR O:62
BINDING SITE FOR RESIDUE CA O 702
09
AC9
SOFTWARE
ASP P:20 , ASP P:22 , ASP P:24 , THR P:26
BINDING SITE FOR RESIDUE CA P 703
10
BC1
SOFTWARE
VAL P:55 , ASP P:56 , ALA P:57 , ASP P:58 , GLY P:59 , GLY P:61 , THR P:62
BINDING SITE FOR RESIDUE CA P 704
11
BC2
SOFTWARE
ASP Q:20 , ASP Q:22 , ASP Q:24 , THR Q:26
BINDING SITE FOR RESIDUE CA Q 705
12
BC3
SOFTWARE
VAL Q:55 , ASP Q:56 , ALA Q:57 , ASP Q:58 , GLY Q:59 , GLY Q:61 , THR Q:62
BINDING SITE FOR RESIDUE CA Q 706
13
BC4
SOFTWARE
ASP R:20 , ASP R:22 , ASP R:24 , THR R:26
BINDING SITE FOR RESIDUE CA R 707
14
BC5
SOFTWARE
VAL R:55 , ASP R:56 , ALA R:57 , ASP R:58 , GLY R:59 , GLY R:61 , THR R:62
BINDING SITE FOR RESIDUE CA R 708
15
BC6
SOFTWARE
ASP S:20 , ASP S:22 , ASP S:24 , THR S:26
BINDING SITE FOR RESIDUE CA S 709
16
BC7
SOFTWARE
VAL S:55 , ASP S:56 , ALA S:57 , ASP S:58 , GLY S:59 , GLY S:61 , THR S:62
BINDING SITE FOR RESIDUE CA S 710
17
BC8
SOFTWARE
ASP T:20 , ASP T:22 , ASP T:24 , THR T:26
BINDING SITE FOR RESIDUE CA T 711
18
BC9
SOFTWARE
VAL T:55 , ASP T:56 , ALA T:57 , ASP T:58 , GLY T:59 , GLY T:61 , THR T:62
BINDING SITE FOR RESIDUE CA T 712
19
CC1
SOFTWARE
ASP O:129 , ASP O:131 , ASP O:133 , GLN O:135 , GLU O:140
BINDING SITE FOR RESIDUE CA O 801
20
CC2
SOFTWARE
ASP O:93 , ASP O:95 , ASN O:97 , TYR O:99 , GLU O:104
BINDING SITE FOR RESIDUE CA O 802
21
CC3
SOFTWARE
ASP P:129 , ASP P:131 , ASP P:133 , GLN P:135 , GLU P:140
BINDING SITE FOR RESIDUE CA P 803
22
CC4
SOFTWARE
ASP P:93 , ASP P:95 , ASN P:97 , TYR P:99 , GLU P:104
BINDING SITE FOR RESIDUE CA P 804
23
CC5
SOFTWARE
ASP Q:129 , ASP Q:131 , ASP Q:133 , GLN Q:135 , GLU Q:140
BINDING SITE FOR RESIDUE CA Q 805
24
CC6
SOFTWARE
ASP Q:93 , ASP Q:95 , ASN Q:97 , TYR Q:99 , GLU Q:104
BINDING SITE FOR RESIDUE CA Q 806
25
CC7
SOFTWARE
ASP R:129 , ASP R:131 , ASP R:133 , GLN R:135 , GLU R:140
BINDING SITE FOR RESIDUE CA R 807
26
CC8
SOFTWARE
ASP R:93 , ASP R:95 , ASN R:97 , TYR R:99 , GLU R:104
BINDING SITE FOR RESIDUE CA R 808
27
CC9
SOFTWARE
ASP S:129 , ASP S:131 , ASP S:133 , GLN S:135 , GLU S:140
BINDING SITE FOR RESIDUE CA S 809
28
DC1
SOFTWARE
ASP S:93 , ASP S:95 , ASN S:97 , TYR S:99 , GLU S:104
BINDING SITE FOR RESIDUE CA S 810
29
DC2
SOFTWARE
ASP T:129 , ASP T:131 , ASP T:133 , GLN T:135 , GLU T:140
BINDING SITE FOR RESIDUE CA T 811
30
DC3
SOFTWARE
ASP T:93 , ASP T:95 , ASN T:97 , TYR T:99 , GLU T:104
BINDING SITE FOR RESIDUE CA T 812
[
close Site info
]
SAPs(SNPs)/Variants
(11, 66)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_069222 (N53I, chain O/P/Q/R/S/T, )
02: VAR_048585 (M72T, chain O/P/Q/R/S/T, )
03: VAR_073275 (F89L, chain O/P/Q/R/S/T, )
04: VAR_073276 (D95V, chain O/P/Q/R/S/T, )
05: VAR_073277 (N97I, chain O/P/Q/R/S/T, )
06: VAR_069223 (N97S, chain O/P/Q/R/S/T, )
07: VAR_073278 (D129G, chain O/P/Q/R/S/T, )
08: VAR_073279 (D131E, chain O/P/Q/R/S/T, )
09: VAR_073280 (D133H, chain O/P/Q/R/S/T, )
10: VAR_073281 (Q135P, chain O/P/Q/R/S/T, )
11: VAR_073282 (F141L, chain O/P/Q/R/S/T, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_069222
N
54
I
CALM_HUMAN
Disease (CPVT4)
---
O/P/Q/R/S/T
N
53
I
02
UniProt
VAR_048585
M
73
T
CALM_HUMAN
Polymorphism
41389749
O/P/Q/R/S/T
M
72
T
03
UniProt
VAR_073275
F
90
L
CALM_HUMAN
Disease (LQT14)
---
O/P/Q/R/S/T
F
89
L
04
UniProt
VAR_073276
D
96
V
CALM_HUMAN
Disease (LQT15)
---
O/P/Q/R/S/T
D
95
V
05
UniProt
VAR_073277
N
98
I
CALM_HUMAN
Disease (LQT15)
---
O/P/Q/R/S/T
N
97
I
06
UniProt
VAR_069223
N
98
S
CALM_HUMAN
Disease (CPVT4)
---
O/P/Q/R/S/T
N
97
S
07
UniProt
VAR_073278
D
130
G
CALM_HUMAN
Disease (LQT14)
---
O/P/Q/R/S/T
D
129
G
08
UniProt
VAR_073279
D
132
E
CALM_HUMAN
Disease (LQT15)
---
O/P/Q/R/S/T
D
131
E
09
UniProt
VAR_073280
D
134
H
CALM_HUMAN
Disease (LQT15)
---
O/P/Q/R/S/T
D
133
H
10
UniProt
VAR_073281
Q
136
P
CALM_HUMAN
Disease (LQT15)
---
O/P/Q/R/S/T
Q
135
P
11
UniProt
VAR_073282
F
142
L
CALM_HUMAN
Disease (LQT14)
---
O/P/Q/R/S/T
F
141
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 48)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (O:7-42,P:7-42,Q:7-42,R:7-42,S:7-42...)
2: EF_HAND_1 (O:20-32,P:20-32,Q:20-32,R:20-32,S:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM1_HUMAN
8-43
44-79
81-116
117-149
24
O:7-42
P:7-42
Q:7-42
R:7-42
S:7-42
T:7-42
O:43-78
P:43-78
Q:43-78
R:43-78
S:43-78
T:43-78
O:80-115
P:80-115
Q:80-115
R:80-115
S:80-115
T:80-115
O:116-148
P:116-148
Q:116-148
R:116-148
S:116-148
T:116-148
CALM2_HUMAN
8-43
44-79
81-116
117-149
24
O:7-42
P:7-42
Q:7-42
R:7-42
S:7-42
T:7-42
O:43-78
P:43-78
Q:43-78
R:43-78
S:43-78
T:43-78
O:80-115
P:80-115
Q:80-115
R:80-115
S:80-115
T:80-115
O:116-148
P:116-148
Q:116-148
R:116-148
S:116-148
T:116-148
CALM3_HUMAN
8-43
44-79
81-116
117-149
24
O:7-42
P:7-42
Q:7-42
R:7-42
S:7-42
T:7-42
O:43-78
P:43-78
Q:43-78
R:43-78
S:43-78
T:43-78
O:80-115
P:80-115
Q:80-115
R:80-115
S:80-115
T:80-115
O:116-148
P:116-148
Q:116-148
R:116-148
S:116-148
T:116-148
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM1_HUMAN
21-33
57-69
94-106
130-142
24
O:20-32
P:20-32
Q:20-32
R:20-32
S:20-32
T:20-32
O:56-68
P:56-68
Q:56-68
R:56-68
S:56-68
T:56-68
O:93-105
P:93-105
Q:93-105
R:93-105
S:93-105
T:93-105
O:129-141
P:129-141
Q:129-141
R:129-141
S:129-141
T:129-141
CALM2_HUMAN
21-33
57-69
94-106
130-142
24
O:20-32
P:20-32
Q:20-32
R:20-32
S:20-32
T:20-32
O:56-68
P:56-68
Q:56-68
R:56-68
S:56-68
T:56-68
O:93-105
P:93-105
Q:93-105
R:93-105
S:93-105
T:93-105
O:129-141
P:129-141
Q:129-141
R:129-141
S:129-141
T:129-141
CALM3_HUMAN
21-33
57-69
94-106
130-142
24
O:20-32
P:20-32
Q:20-32
R:20-32
S:20-32
T:20-32
O:56-68
P:56-68
Q:56-68
R:56-68
S:56-68
T:56-68
O:93-105
P:93-105
Q:93-105
R:93-105
S:93-105
T:93-105
O:129-141
P:129-141
Q:129-141
R:129-141
S:129-141
T:129-141
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1xfxo1 (O:3-75)
1b: SCOP_d1xfxp1 (P:3-75)
1c: SCOP_d1xfxq1 (Q:3-75)
1d: SCOP_d1xfxr1 (R:3-75)
1e: SCOP_d1xfxs1 (S:3-75)
1f: SCOP_d1xfxt1 (T:3-75)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Calmodulin
(152)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d1xfxo1
O:3-75
1b
d1xfxp1
P:3-75
1c
d1xfxq1
Q:3-75
1d
d1xfxr1
R:3-75
1e
d1xfxs1
S:3-75
1f
d1xfxt1
T:3-75
[
close SCOP info
]
CATH Domains
(2, 13)
Info
all CATH domains
1a: CATH_1xfxA01 (A:64-291)
1b: CATH_1xfxB01 (B:64-291)
1c: CATH_1xfxC01 (C:64-291)
1d: CATH_1xfxD01 (D:64-291)
1e: CATH_1xfxE01 (E:64-291)
1f: CATH_1xfxF01 (F:64-291)
2a: CATH_1xfxO01 (O:18-78)
2b: CATH_1xfxP01 (P:18-78)
2c: CATH_1xfxR01 (R:18-78)
2d: CATH_1xfxT01 (T:18-78)
2e: CATH_1xfxO02 (O:79-148)
2f: CATH_1xfxR02 (R:79-148)
2g: CATH_1xfxT02 (T:79-148)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Bacillus anthracis. Organism_taxid: 1392.
(15)
1a
1xfxA01
A:64-291
1b
1xfxB01
B:64-291
1c
1xfxC01
C:64-291
1d
1xfxD01
D:64-291
1e
1xfxE01
E:64-291
1f
1xfxF01
F:64-291
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Bacillus anthracis. Organism_taxid: 1392.
(10)
2a
1xfxO01
O:18-78
2b
1xfxP01
P:18-78
2c
1xfxR01
R:18-78
2d
1xfxT01
T:18-78
2e
1xfxO02
O:79-148
2f
1xfxR02
R:79-148
2g
1xfxT02
T:79-148
[
close CATH info
]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_ATLF_1xfxF01 (F:64-277)
1b: PFAM_ATLF_1xfxF02 (F:64-277)
1c: PFAM_ATLF_1xfxF03 (F:64-277)
1d: PFAM_ATLF_1xfxF04 (F:64-277)
1e: PFAM_ATLF_1xfxF05 (F:64-277)
1f: PFAM_ATLF_1xfxF06 (F:64-277)
2a: PFAM_Anthrax_toxA_1xfxF07 (F:293-472)
2b: PFAM_Anthrax_toxA_1xfxF08 (F:293-472)
2c: PFAM_Anthrax_toxA_1xfxF09 (F:293-472)
2d: PFAM_Anthrax_toxA_1xfxF10 (F:293-472)
2e: PFAM_Anthrax_toxA_1xfxF11 (F:293-472)
2f: PFAM_Anthrax_toxA_1xfxF12 (F:293-472)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: ATLF]
(15)
Family
:
ATLF
(15)
Bacillus anthracis
(15)
1a
ATLF-1xfxF01
F:64-277
1b
ATLF-1xfxF02
F:64-277
1c
ATLF-1xfxF03
F:64-277
1d
ATLF-1xfxF04
F:64-277
1e
ATLF-1xfxF05
F:64-277
1f
ATLF-1xfxF06
F:64-277
Clan
:
no clan defined [family: Anthrax_toxA]
(16)
Family
:
Anthrax_toxA
(16)
Bacillus anthracis
(13)
2a
Anthrax_toxA-1xfxF07
F:293-472
2b
Anthrax_toxA-1xfxF08
F:293-472
2c
Anthrax_toxA-1xfxF09
F:293-472
2d
Anthrax_toxA-1xfxF10
F:293-472
2e
Anthrax_toxA-1xfxF11
F:293-472
2f
Anthrax_toxA-1xfxF12
F:293-472
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain O
Chain P
Chain Q
Chain R
Chain S
Chain T
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (889 KB)
Header - Asym.Unit
Biol.Unit 1 (155 KB)
Header - Biol.Unit 1
Biol.Unit 2 (154 KB)
Header - Biol.Unit 2
Biol.Unit 3 (154 KB)
Header - Biol.Unit 3
Biol.Unit 4 (154 KB)
Header - Biol.Unit 4
Biol.Unit 5 (154 KB)
Header - Biol.Unit 5
Biol.Unit 6 (155 KB)
Header - Biol.Unit 6
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1XFX
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
