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1XF7
Asym. Unit
Info
Asym.Unit (329 KB)
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Models
(40 )
Title
:
HIGH RESOLUTION NMR STRUCTURE OF THE WILMS' TUMOR SUPPRESSOR PROTEIN (WT1) FINGER 3
Authors
:
M. J. Lachenmann, J. E. Ladbury, J. Dong, K. Huang, P. Carey, M. A. Weiss
Date
:
14 Sep 04 (Deposition) - 14 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (40 x)
Keywords
:
Zinc Finger, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. J. Lachenmann, J. E. Ladbury, J. Dong, K. Huang, P. Carey, M. A. Weiss
Why Zinc Fingers Prefer Zinc: Ligand-Field Symmetry And The Hidden Thermodynamics Of Metal Ion Selectivity
Biochemistry V. 43 13910 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
1
Ligand/Ion
ZINC ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:5 , CYS A:8 , HIS A:21 , HIS A:25
BINDING SITE FOR RESIDUE ZN A 30
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close Site info
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SAPs(SNPs)/Variants
(17, 17)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
01: VAR_007749 (F3L, chain A, )
02: VAR_015058 (C5R, chain A, )
03: VAR_015059 (C8F, chain A, )
04: VAR_043805 (C8R, chain A, )
05: VAR_043806 (C8Y, chain A, )
06: VAR_015060 (F12L, chain A, )
07: VAR_043807 (R14L, chain A, )
08: VAR_043808 (R14P, chain A, )
09: VAR_015061 (R14Q, chain A, )
10: VAR_007750 (R14W, chain A, )
11: VAR_007752 (D16G, chain A, )
12: VAR_007751 (D16N, chain A, )
13: VAR_043809 (D16Y, chain A, )
14: VAR_043810 (H17P, chain A, )
15: VAR_015062 (L18P, chain A, )
16: VAR_043811 (H21Y, chain A, )
17: VAR_043812 (H25R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_007749
F
383
L
WT1_HUMAN
Disease (NPHS4)
---
A
F
3
L
02
UniProt
VAR_015058
C
385
R
WT1_HUMAN
Disease (DDS)
---
A
C
5
R
03
UniProt
VAR_015059
C
388
F
WT1_HUMAN
Disease (DDS)
---
A
C
8
F
04
UniProt
VAR_043805
C
388
R
WT1_HUMAN
Disease (NPHS4)
---
A
C
8
R
05
UniProt
VAR_043806
C
388
Y
WT1_HUMAN
Disease (DDS)
---
A
C
8
Y
06
UniProt
VAR_015060
F
392
L
WT1_HUMAN
Disease (FS)
---
A
F
12
L
07
UniProt
VAR_043807
R
394
L
WT1_HUMAN
Disease (WT1)
---
A
R
14
L
08
UniProt
VAR_043808
R
394
P
WT1_HUMAN
Disease (DDS)
---
A
R
14
P
09
UniProt
VAR_015061
R
394
Q
WT1_HUMAN
Disease (DDS)
---
A
R
14
Q
10
UniProt
VAR_007750
R
394
W
WT1_HUMAN
Disease (WT1)
---
A
R
14
W
11
UniProt
VAR_007752
D
396
G
WT1_HUMAN
Disease (DDS)
---
A
D
16
G
12
UniProt
VAR_007751
D
396
N
WT1_HUMAN
Disease (NPHS4)
---
A
D
16
N
13
UniProt
VAR_043809
D
396
Y
WT1_HUMAN
Disease (DDS)
---
A
D
16
Y
14
UniProt
VAR_043810
H
397
P
WT1_HUMAN
Disease (NPHS4)
---
A
H
17
P
15
UniProt
VAR_015062
L
398
P
WT1_HUMAN
Disease (DDS)
---
A
L
18
P
16
UniProt
VAR_043811
H
401
Y
WT1_HUMAN
Disease (DDS)
---
A
H
21
Y
17
UniProt
VAR_043812
H
405
R
WT1_HUMAN
Disease (DDS)
---
A
H
25
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (-|-|A:5-25|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
WT1_HUMAN
325-347
355-377
385-405
416-438
1
-
-
A:5-25
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1xf7a_ (A:)
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Classes
(
)
(
)
Folds
(
)
(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
beta-beta-alpha zinc fingers
(183)
Superfamily
:
beta-beta-alpha zinc fingers
(183)
Family
:
Classic zinc finger, C2H2
(162)
Protein domain
:
Wilms' tumor protein, WT1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1xf7a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_zf_H2C2_2_1xf7A01 (A:17-27)
1b: PFAM_zf_H2C2_2_1xf7A02 (A:17-27)
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Clan
:
C2H2-zf
(71)
Family
:
zf-H2C2_2
(52)
Homo sapiens (Human)
(37)
1a
zf-H2C2_2-1xf7A01
A:17-27
1b
zf-H2C2_2-1xf7A02
A:17-27
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Chain A
Asymmetric Unit 1
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Asym.Unit (329 KB)
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