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1XEY
Asym. Unit
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Asym.Unit (160 KB)
Biol.Unit 1 (455 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF ESCHERICHIA COLI GADA WITH GLUTARATE AT 2.05 A RESOLUTION
Authors
:
D. I. Dutyshev, E. L. Darii, N. P. Fomenkova, I. V. Pechik, K. M. Polyakov S. V. Nikonov, N. S. Andreeva, B. S. Sukhareva
Date
:
13 Sep 04 (Deposition) - 05 Oct 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Lyase, Glutamate Decarboxylase, Complex With Glutarate
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. I. Dutyshev, E. L. Darii, N. P. Fomenkova, I. V. Pechik, K. M. Polyakov, S. V. Nikonov, N. S. Andreeva, B. S. Sukhareva
Structure Of Escherichia Coli Glutamate Decarboxylase (Gadalpha) In Complex With Glutarate At 2. 05 Angstroms Resolution.
Acta Crystallogr. , Sect. D V. 61 230 2005
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: GLUTARIC ACID (GUAa)
2b: GLUTARIC ACID (GUAb)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
GUA
2
Ligand/Ion
GLUTARIC ACID
3
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:279 , LEU A:334 , VAL A:342 , ARG A:427 , HOH A:859 , SER B:16 , HOH B:858
BINDING SITE FOR RESIDUE ACT A 600
2
AC2
SOFTWARE
SER A:16 , ARG A:17 , PHE A:18 , HOH A:714 , TRP B:67 , VAL B:342 , ARG B:427
BINDING SITE FOR RESIDUE ACT A 700
3
AC3
SOFTWARE
SER A:126 , SER A:127 , GLN A:163 , CYS A:165 , THR A:208 , THR A:212 , ASP A:243 , ALA A:245 , SER A:273 , HIS A:275 , LYS A:276 , HOH A:738 , HOH A:784 , PHE B:317 , SER B:318 , GUA B:505 , HOH B:959
BINDING SITE FOR RESIDUE PLP A 500
4
AC4
SOFTWARE
PHE A:317 , SER A:318 , GUA A:506 , GLY B:125 , SER B:126 , SER B:127 , GLN B:163 , CYS B:165 , THR B:208 , THR B:212 , ASP B:243 , ALA B:245 , SER B:273 , HIS B:275 , LYS B:276 , HOH B:826 , HOH B:879
BINDING SITE FOR RESIDUE PLP B 500
5
AC5
SOFTWARE
THR A:62 , PHE A:63 , GLN A:163 , LYS A:276 , ARG A:422 , PLP A:500 , ASN B:83 , ASP B:86 , GLU B:89 , HOH B:959 , HOH B:1074
BINDING SITE FOR RESIDUE GUA B 505
6
AC6
SOFTWARE
ASN A:83 , ASP A:86 , GLU A:89 , THR B:62 , PHE B:63 , GLN B:163 , LYS B:276 , PLP B:500
BINDING SITE FOR RESIDUE GUA A 506
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DDC_GAD_HDC_YDC (A:269-290,B:269-290)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DDC_GAD_HDC_YDC
PS00392
DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site.
DCEA_ECOLI
269-290
2
A:269-290
B:269-290
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1xeya_ (A:)
1b: SCOP_d1xeyb_ (B:)
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(
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
Pyridoxal-dependent decarboxylase
(14)
Protein domain
:
Glutamate decarboxylase alpha, GadA
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1xeya_
A:
1b
d1xeyb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pyridoxal_deC_1xeyB01 (B:33-383)
1b: PFAM_Pyridoxal_deC_1xeyB02 (B:33-383)
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Organisms
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Clan
:
PLP_aminotran
(240)
Family
:
Pyridoxal_deC
(14)
Escherichia coli (strain K12)
(3)
1a
Pyridoxal_deC-1xeyB01
B:33-383
1b
Pyridoxal_deC-1xeyB02
B:33-383
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Asymmetric Unit 1
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