PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1XES
Biol. Unit 1
Info
Asym.Unit (257 KB)
Biol.Unit 1 (133 KB)
Biol.Unit 2 (123 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF STILBENE SYNTHASE FROM PINUS SYLVESTRIS
Authors
:
S. H. Ng, D. Chirgadze, D. Spiteller, T. L. Li, J. B. Spencer, T. L. Blundell
Date
:
12 Sep 04 (Deposition) - 11 Apr 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Native Structure, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. H. Ng, D. Chirgadze, D. Spiteller, T. L. Li, J. B. Spencer, T. L. Blundell
Crystal Structure Of Stilbene Synthase From Pinus Sylvestris
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: 3-(1H-INDOL-3-YL)-2-OXOPROPANOIC A... (3IOa)
1b: 3-(1H-INDOL-3-YL)-2-OXOPROPANOIC A... (3IOb)
1c: 3-(1H-INDOL-3-YL)-2-OXOPROPANOIC A... (3IOc)
1d: 3-(1H-INDOL-3-YL)-2-OXOPROPANOIC A... (3IOd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3IO
2
Ligand/Ion
3-(1H-INDOL-3-YL)-2-OXOPROPANOIC ACID
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:167 , PHE A:218 , ILE A:257 , GLY A:258 , PHE A:268 , HIS A:306 , ASN A:339 , PHE A:376 , HOH A:2097 , HOH A:2139
BINDING SITE FOR RESIDUE 3IO A 2000
2
AC2
SOFTWARE
CYS B:167 , PHE B:218 , ILE B:257 , PHE B:268 , HIS B:306 , ASN B:339 , PHE B:376 , HOH B:3056 , HOH B:3131
BINDING SITE FOR RESIDUE 3IO B 3000
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CHALCONE_SYNTH (A:159-175,B:159-175)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHALCONE_SYNTH
PS00441
Chalcone and stilbene synthases active site.
DPSS_PINSY
159-175
2
A:159-175
B:159-175
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1xesa1 (A:6-238)
1b: SCOP_d1xesa2 (A:239-392)
1c: SCOP_d1xesb1 (B:6-238)
1d: SCOP_d1xesb2 (B:239-392)
1e: SCOP_d1xesc1 (C:6-238)
1f: SCOP_d1xesc2 (C:239-392)
1g: SCOP_d1xesd1 (D:6-238)
1h: SCOP_d1xesd2 (D:239-393)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
automated matches
(108)
Protein domain
:
automated matches
(108)
Scots pine (Pinus sylvestris) [TaxId: 3349]
(2)
1a
d1xesa1
A:6-238
1b
d1xesa2
A:239-392
1c
d1xesb1
B:6-238
1d
d1xesb2
B:239-392
1e
d1xesc1
C:6-238
1f
d1xesc2
C:239-392
1g
d1xesd1
D:6-238
1h
d1xesd2
D:239-393
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1xesD02 (D:239-393)
1b: CATH_1xesA02 (A:239-392)
1c: CATH_1xesC01 (C:6-238)
1d: CATH_1xesD01 (D:6-238)
1e: CATH_1xesA01 (A:6-238)
1f: CATH_1xesB01 (B:6-238)
1g: CATH_1xesB02 (B:239-392)
1h: CATH_1xesC02 (C:239-392)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Scots pine (Pinus sylvestris)
(3)
1a
1xesD02
D:239-393
1b
1xesA02
A:239-392
1c
1xesC01
C:6-238
1d
1xesD01
D:6-238
1e
1xesA01
A:6-238
1f
1xesB01
B:6-238
1g
1xesB02
B:239-392
1h
1xesC02
C:239-392
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Chal_sti_synt_C_1xesD01 (D:241-391)
1b: PFAM_Chal_sti_synt_C_1xesD02 (D:241-391)
1c: PFAM_Chal_sti_synt_C_1xesD03 (D:241-391)
1d: PFAM_Chal_sti_synt_C_1xesD04 (D:241-391)
2a: PFAM_Chal_sti_synt_N_1xesD05 (D:6-231)
2b: PFAM_Chal_sti_synt_N_1xesD06 (D:6-231)
2c: PFAM_Chal_sti_synt_N_1xesD07 (D:6-231)
2d: PFAM_Chal_sti_synt_N_1xesD08 (D:6-231)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Thiolase
(72)
Family
:
Chal_sti_synt_C
(11)
Pinus sylvestris (Scots pine)
(2)
1a
Chal_sti_synt_C-1xesD01
D:241-391
1b
Chal_sti_synt_C-1xesD02
D:241-391
1c
Chal_sti_synt_C-1xesD03
D:241-391
1d
Chal_sti_synt_C-1xesD04
D:241-391
Family
:
Chal_sti_synt_N
(11)
Pinus sylvestris (Scots pine)
(2)
2a
Chal_sti_synt_N-1xesD05
D:6-231
2b
Chal_sti_synt_N-1xesD06
D:6-231
2c
Chal_sti_synt_N-1xesD07
D:6-231
2d
Chal_sti_synt_N-1xesD08
D:6-231
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (257 KB)
Header - Asym.Unit
Biol.Unit 1 (133 KB)
Header - Biol.Unit 1
Biol.Unit 2 (123 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1XES
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
