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1XDT
Asym. Unit
Info
Asym.Unit (95 KB)
Biol.Unit 1 (176 KB)
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(1)
Title
:
COMPLEX OF DIPHTHERIA TOXIN AND HEPARIN-BINDING EPIDERMAL GROWTH FACTOR
Authors
:
G. V. Louie, W. Yang, M. E. Bowman, S. Choe
Date
:
18 Nov 97 (Deposition) - 25 Feb 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : R,T
Biol. Unit 1: R,T (2x)
Keywords
:
Complex (Toxin-Growth Factor), Diphtheria Toxin, Receptor, Heparin- Binding Epidermal Growth Factor, Epidermal Growth Factor, Complex (Toxin-Growth Factor) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. V. Louie, W. Yang, M. E. Bowman, S. Choe
Crystal Structure Of The Complex Of Diphtheria Toxin With A Extracellular Fragment Of Its Receptor.
Mol. Cell V. 1 67 1997
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 1)
Info
All PROSITE Patterns/Profiles
1: EGF_1 (R:132-143)
2: EGF_2 (R:132-143)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_1
PS00022
EGF-like domain signature 1.
HBEGF_HUMAN
132-143
1
R:132-143
2
EGF_2
PS01186
EGF-like domain signature 2.
HBEGF_HUMAN
132-143
1
R:132-143
[
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Exons
(2, 2)
Info
All Exons
Exon 1.3b (R:107-133)
Exon 1.4b (R:133-147)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3b
2: Boundary 1.3b/1.4b
3: Boundary 1.4b/1.5b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000230990
1a
ENSE00002023958
chr5:
139726216-139725868
349
HBEGF_HUMAN
1-16
16
0
-
-
1.2
ENST00000230990
2
ENSE00000764836
chr5:
139725669-139725496
174
HBEGF_HUMAN
16-74
59
0
-
-
1.3b
ENST00000230990
3b
ENSE00000764835
chr5:
139722397-139722220
178
HBEGF_HUMAN
74-133
60
1
R:107-133
27
1.4b
ENST00000230990
4b
ENSE00000764833
chr5:
139715612-139715457
156
HBEGF_HUMAN
133-185
53
1
R:133-147
15
1.5b
ENST00000230990
5b
ENSE00000814136
chr5:
139714333-139714243
91
HBEGF_HUMAN
185-208
24
0
-
-
1.6c
ENST00000230990
6c
ENSE00001376016
chr5:
139713865-139712428
1438
HBEGF_HUMAN
-
0
0
-
-
[
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SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1xdtt1 (T:381-535)
2a: SCOP_d1xdtt2 (T:1-188)
3a: SCOP_d1xdtt3 (T:200-380)
4a: SCOP_d1xdtr_ (R:)
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)
(
)
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)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Diphtheria toxin, C-terminal domain
(9)
Family
:
Diphtheria toxin, C-terminal domain
(7)
Protein domain
:
Diphtheria toxin, C-terminal domain
(7)
Corynebacterium diphtheriae [TaxId: 1717]
(7)
1a
d1xdtt1
T:381-535
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ADP-ribosylation
(157)
Superfamily
:
ADP-ribosylation
(157)
Family
:
ADP-ribosylating toxins
(85)
Protein domain
:
Diphtheria toxin, N-terminal domain
(8)
Corynebacterium diphtheriae [TaxId: 1717]
(8)
2a
d1xdtt2
T:1-188
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Toxins' membrane translocation domains
(135)
Superfamily
:
Diphtheria toxin, middle domain
(9)
Family
:
Diphtheria toxin, middle domain
(7)
Protein domain
:
Diphtheria toxin, middle domain
(7)
Corynebacterium diphtheriae [TaxId: 1717]
(7)
3a
d1xdtt3
T:200-380
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Heparin-binding epidermal growth factor, HBEGF
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
4a
d1xdtr_
R:
[
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]
CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_1xdtT01 (T:1-187)
2a: CATH_1xdtT02 (T:200-379)
3a: CATH_1xdtR00 (R:107-147)
4a: CATH_1xdtT03 (T:380-533)
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)
(
)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Diphtheria Toxin; domain 1
(22)
Homologous Superfamily
:
Diphtheria Toxin, domain 1
(22)
Corynebacterium diphtheriae. Organism_taxid: 1717. Variant: lysogenized by the corynephage beta.
(1)
1a
1xdtT01
T:1-187
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Diphtheria toxin, middle domain
(6)
Corynebacterium diphtheriae. Organism_taxid: 1717. Variant: lysogenized by the corynephage beta.
(1)
2a
1xdtT02
T:200-379
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Corynebacterium diphtheriae. Organism_taxid: 1717. Variant: lysogenized by the corynephage beta.
(1)
3a
1xdtR00
R:107-147
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.700, no name defined]
(6)
Corynebacterium diphtheriae. Organism_taxid: 1717. Variant: lysogenized by the corynephage beta.
(1)
4a
1xdtT03
T:380-533
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Pfam Domains
(4, 4)
Info
all PFAM domains
1a: PFAM_Diphtheria_C_1xdtT01 (T:1-187)
2a: PFAM_EGF_1xdtR01 (R:108-142)
3a: PFAM_Diphtheria_R_1xdtT02 (T:381-534)
4a: PFAM_Diphtheria_T_1xdtT03 (T:200-379)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
ADP-ribosyl
(56)
Family
:
Diphtheria_C
(4)
Corynephage beta
(4)
1a
Diphtheria_C-1xdtT01
T:1-187
Clan
:
EGF
(60)
Family
:
EGF
(31)
Homo sapiens (Human)
(25)
2a
EGF-1xdtR01
R:108-142
Clan
:
no clan defined [family: Diphtheria_R]
(4)
Family
:
Diphtheria_R
(4)
Corynephage beta
(4)
3a
Diphtheria_R-1xdtT02
T:381-534
Clan
:
no clan defined [family: Diphtheria_T]
(4)
Family
:
Diphtheria_T
(4)
Corynephage beta
(4)
4a
Diphtheria_T-1xdtT03
T:200-379
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Asymmetric Unit 1
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