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1XDM
Biol. Unit 2
Info
Asym.Unit (362 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (92 KB)
Biol.Unit 3 (92 KB)
Biol.Unit 4 (92 KB)
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(1)
Title
:
STRUCTURE OF HUMAN ALDOLASE B ASSOCIATED WITH HEREDITARY FRUCTOSE INTOLERANCE (A149P), AT 291K
Authors
:
A. D. Malay, K. N. Allen, D. R. Tolan
Date
:
07 Sep 04 (Deposition) - 22 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,W,X,Y,Z
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: W,X (1x)
Biol. Unit 4: Y,Z (1x)
Keywords
:
Alpha/Beta Barrel, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. D. Malay, K. N. Allen, D. R. Tolan
Structure Of The Thermolabile Mutant Aldolase B, A149P: Molecular Basis Of Hereditary Fructose Intolerance.
J. Mol. Biol. V. 347 135 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(2, 2)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
GLN C:202 , ARG C:258 , LYS D:12
BINDING SITE FOR RESIDUE SO4 C 364
2
AC7
SOFTWARE
GLN C:9 , LYS C:12 , HOH C:368 , GLN D:202 , THR D:254 , ARG D:258
BINDING SITE FOR RESIDUE SO4 C 365
[
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]
SAPs(SNPs)/Variants
(18, 35)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_020822 (I73T, chain C/D, )
02: VAR_038429 (R133S, chain C/D, )
03: VAR_000551 (C134R, chain C/D, )
04: VAR_000552 (W147R, chain C/D, )
05: VAR_000553 (P149P, chain D, )
06: VAR_000554 (A174D, chain C/D, )
07: VAR_058211 (C177R, chain C/D, )
08: VAR_020824 (P184R, chain C/D, )
09: VAR_020825 (E206Q, chain C/D, )
10: VAR_020826 (V221F, chain C/D, )
11: VAR_020827 (L228P, chain C/D, )
12: VAR_000555 (L256P, chain C/D, )
13: VAR_038430 (I267N, chain C/D, )
14: VAR_058212 (L283P, chain C/D, )
15: VAR_020828 (R303Q, chain C/D, )
16: VAR_000556 (R303W, chain C/D, )
17: VAR_000557 (N334K, chain C/D, )
18: VAR_000558 (A337V, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_020822
I
74
T
ALDOB_HUMAN
Disease (HFI)
---
C/D
I
73
T
02
UniProt
VAR_038429
R
134
S
ALDOB_HUMAN
Polymorphism
10123355
C/D
R
133
S
03
UniProt
VAR_000551
C
135
R
ALDOB_HUMAN
Disease (HFI)
---
C/D
C
134
R
04
UniProt
VAR_000552
W
148
R
ALDOB_HUMAN
Unclassified
---
C/D
W
147
R
05
UniProt
VAR_000553
A
150
P
ALDOB_HUMAN
Disease (HFI)
1800546
D
P
149
P
06
UniProt
VAR_000554
A
175
D
ALDOB_HUMAN
Disease (HFI)
76917243
C/D
A
174
D
07
UniProt
VAR_058211
C
178
R
ALDOB_HUMAN
Disease (HFI)
---
C/D
C
177
R
08
UniProt
VAR_020824
P
185
R
ALDOB_HUMAN
Disease (HFI)
---
C/D
P
184
R
09
UniProt
VAR_020825
E
207
Q
ALDOB_HUMAN
Polymorphism
3739721
C/D
E
206
Q
10
UniProt
VAR_020826
V
222
F
ALDOB_HUMAN
Disease (HFI)
---
C/D
V
221
F
11
UniProt
VAR_020827
L
229
P
ALDOB_HUMAN
Disease (HFI)
---
C/D
L
228
P
12
UniProt
VAR_000555
L
257
P
ALDOB_HUMAN
Disease (HFI)
---
C/D
L
256
P
13
UniProt
VAR_038430
I
268
N
ALDOB_HUMAN
Polymorphism
10989495
C/D
I
267
N
14
UniProt
VAR_058212
L
284
P
ALDOB_HUMAN
Disease (HFI)
---
C/D
L
283
P
15
UniProt
VAR_020828
R
304
Q
ALDOB_HUMAN
Disease (HFI)
145078268
C/D
R
303
Q
16
UniProt
VAR_000556
R
304
W
ALDOB_HUMAN
Disease (HFI)
---
C/D
R
303
W
17
UniProt
VAR_000557
N
335
K
ALDOB_HUMAN
Disease (HFI)
---
C/D
N
334
K
18
UniProt
VAR_000558
A
338
V
ALDOB_HUMAN
Disease (HFI)
---
C/D
A
337
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ALDOLASE_CLASS_I (C:221-231,D:221-231)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOLASE_CLASS_I
PS00158
Fructose-bisphosphate aldolase class-I active site.
ALDOB_HUMAN
222-232
2
-
-
C:221-231
D:221-231
-
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1xdma_ (A:)
1b: SCOP_d1xdmb_ (B:)
1c: SCOP_d1xdmc_ (C:)
1d: SCOP_d1xdmd_ (D:)
1e: SCOP_d1xdmw_ (W:)
1f: SCOP_d1xdmx_ (X:)
1g: SCOP_d1xdmy_ (Y:)
1h: SCOP_d1xdmz_ (Z:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
Fructose-1,6-bisphosphate aldolase
(39)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1xdma_
A:
1b
d1xdmb_
B:
1c
d1xdmc_
C:
1d
d1xdmd_
D:
1e
d1xdmw_
W:
1f
d1xdmx_
X:
1g
d1xdmy_
Y:
1h
d1xdmz_
Z:
[
close SCOP info
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1xdmZ00 (Z:5-342)
1b: CATH_1xdmX00 (X:6-344)
1c: CATH_1xdmA00 (A:5-342)
1d: CATH_1xdmB00 (B:6-345)
1e: CATH_1xdmY00 (Y:6-345)
1f: CATH_1xdmD00 (D:6-342)
1g: CATH_1xdmW00 (W:6-343)
1h: CATH_1xdmC00 (C:6-345)
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)
(
)
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)
(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
1xdmZ00
Z:5-342
1b
1xdmX00
X:6-344
1c
1xdmA00
A:5-342
1d
1xdmB00
B:6-345
1e
1xdmY00
Y:6-345
1f
1xdmD00
D:6-342
1g
1xdmW00
W:6-343
1h
1xdmC00
C:6-345
[
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Glycolytic_1xdmZ01 (Z:14-342)
1b: PFAM_Glycolytic_1xdmZ02 (Z:14-342)
1c: PFAM_Glycolytic_1xdmZ03 (Z:14-342)
1d: PFAM_Glycolytic_1xdmZ04 (Z:14-342)
1e: PFAM_Glycolytic_1xdmZ05 (Z:14-342)
1f: PFAM_Glycolytic_1xdmZ06 (Z:14-342)
1g: PFAM_Glycolytic_1xdmZ07 (Z:14-342)
1h: PFAM_Glycolytic_1xdmZ08 (Z:14-342)
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Clans
(
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(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Glycolytic]
(21)
Family
:
Glycolytic
(21)
Homo sapiens (Human)
(4)
1a
Glycolytic-1xdmZ01
Z:14-342
1b
Glycolytic-1xdmZ02
Z:14-342
1c
Glycolytic-1xdmZ03
Z:14-342
1d
Glycolytic-1xdmZ04
Z:14-342
1e
Glycolytic-1xdmZ05
Z:14-342
1f
Glycolytic-1xdmZ06
Z:14-342
1g
Glycolytic-1xdmZ07
Z:14-342
1h
Glycolytic-1xdmZ08
Z:14-342
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