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Getting 'Exon' information from database.
1XDL
Asym. Unit
Info
Asym.Unit (380 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (99 KB)
Biol.Unit 3 (98 KB)
Biol.Unit 4 (95 KB)
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(1)
Title
:
STRUCTURE OF HUMAN ALDOLASE B ASSOCIATED WITH HEREDITARY FRUCTOSE INTOLERANCE (A149P), AT 277K
Authors
:
A. D. Malay, K. N. Allen, D. R. Tolan
Date
:
07 Sep 04 (Deposition) - 22 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,W,X,Y,Z
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: W,X (1x)
Biol. Unit 4: Y,Z (1x)
Keywords
:
Alpha/Beta Barrel, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. D. Malay, K. N. Allen, D. R. Tolan
Structure Of The Thermolabile Mutant Aldolase B, A149P: Molecular Basis Of Hereditary Fructose Intolerance.
J. Mol. Biol. V. 347 135 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 8)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN W:202 , ARG W:258 , LYS X:12
BINDING SITE FOR RESIDUE SO4 W 364
2
AC2
SOFTWARE
LYS A:12 , ARG B:258
BINDING SITE FOR RESIDUE SO4 B 364
3
AC3
SOFTWARE
LYS W:12 , ARG X:258
BINDING SITE FOR RESIDUE SO4 X 364
4
AC4
SOFTWARE
GLN Y:202 , ARG Y:258 , LYS Z:12
BINDING SITE FOR RESIDUE SO4 Y 364
5
AC5
SOFTWARE
GLN C:202 , ARG C:258 , LYS D:12
BINDING SITE FOR RESIDUE SO4 C 364
6
AC6
SOFTWARE
GLN A:202 , ARG A:258 , LYS B:12
BINDING SITE FOR RESIDUE SO4 A 364
7
AC7
SOFTWARE
LYS C:12 , GLN D:202 , ARG D:258
BINDING SITE FOR RESIDUE SO4 C 365
8
AC8
SOFTWARE
LYS Y:12 , GLN Z:202 , ARG Z:258
BINDING SITE FOR RESIDUE SO4 Y 365
[
close Site info
]
SAPs(SNPs)/Variants
(18, 141)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_020822 (I73T, chain A/B/C/D/W/X/Y/Z, )
02: VAR_038429 (R133S, chain A/B/C/D/W/X/Y/Z, )
03: VAR_000551 (C134R, chain A/B/C/D/W/X/Y/Z, )
04: VAR_000552 (W147R, chain A/B/C/D/W/X/Y/Z, )
05: VAR_000553 (P149P, chain A/C/X/Y/Z, )
06: VAR_000554 (A174D, chain A/B/C/D/W/X/Y/Z, )
07: VAR_058211 (C177R, chain A/B/C/D/W/X/Y/Z, )
08: VAR_020824 (P184R, chain A/B/C/D/W/X/Y/Z, )
09: VAR_020825 (E206Q, chain A/B/C/D/W/X/Y/Z, )
10: VAR_020826 (V221F, chain A/B/C/D/W/X/Y/Z, )
11: VAR_020827 (L228P, chain A/B/C/D/W/X/Y/Z, )
12: VAR_000555 (L256P, chain A/B/C/D/W/X/Y/Z, )
13: VAR_038430 (I267N, chain A/B/C/D/W/X/Y/Z, )
14: VAR_058212 (L283P, chain A/B/C/D/W/X/Y/Z, )
15: VAR_020828 (R303Q, chain A/B/C/D/W/X/Y/Z, )
16: VAR_000556 (R303W, chain A/B/C/D/W/X/Y/Z, )
17: VAR_000557 (N334K, chain A/B/C/D/W/X/Y/Z, )
18: VAR_000558 (A337V, chain A/B/C/D/W/X/Y/Z, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_020822
I
74
T
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/W/X/Y/Z
I
73
T
02
UniProt
VAR_038429
R
134
S
ALDOB_HUMAN
Polymorphism
10123355
A/B/C/D/W/X/Y/Z
R
133
S
03
UniProt
VAR_000551
C
135
R
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/W/X/Y/Z
C
134
R
04
UniProt
VAR_000552
W
148
R
ALDOB_HUMAN
Unclassified
---
A/B/C/D/W/X/Y/Z
W
147
R
05
UniProt
VAR_000553
A
150
P
ALDOB_HUMAN
Disease (HFI)
1800546
A/C/X/Y/Z
P
149
P
06
UniProt
VAR_000554
A
175
D
ALDOB_HUMAN
Disease (HFI)
76917243
A/B/C/D/W/X/Y/Z
A
174
D
07
UniProt
VAR_058211
C
178
R
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/W/X/Y/Z
C
177
R
08
UniProt
VAR_020824
P
185
R
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/W/X/Y/Z
P
184
R
09
UniProt
VAR_020825
E
207
Q
ALDOB_HUMAN
Polymorphism
3739721
A/B/C/D/W/X/Y/Z
E
206
Q
10
UniProt
VAR_020826
V
222
F
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/W/X/Y/Z
V
221
F
11
UniProt
VAR_020827
L
229
P
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/W/X/Y/Z
L
228
P
12
UniProt
VAR_000555
L
257
P
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/W/X/Y/Z
L
256
P
13
UniProt
VAR_038430
I
268
N
ALDOB_HUMAN
Polymorphism
10989495
A/B/C/D/W/X/Y/Z
I
267
N
14
UniProt
VAR_058212
L
284
P
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/W/X/Y/Z
L
283
P
15
UniProt
VAR_020828
R
304
Q
ALDOB_HUMAN
Disease (HFI)
145078268
A/B/C/D/W/X/Y/Z
R
303
Q
16
UniProt
VAR_000556
R
304
W
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/W/X/Y/Z
R
303
W
17
UniProt
VAR_000557
N
335
K
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/W/X/Y/Z
N
334
K
18
UniProt
VAR_000558
A
338
V
ALDOB_HUMAN
Disease (HFI)
---
A/B/C/D/W/X/Y/Z
A
337
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: ALDOLASE_CLASS_I (A:221-231,B:221-231,C:221-231,D:22...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDOLASE_CLASS_I
PS00158
Fructose-bisphosphate aldolase class-I active site.
ALDOB_HUMAN
222-232
8
A:221-231
B:221-231
C:221-231
D:221-231
W:221-231
X:221-231
Y:221-231
Z:221-231
[
close PROSITE info
]
Exons
(8, 64)
Info
All Exons
Exon 1.2b (A:6-37 | B:4-37 | C:6-37 | D:6-37 ...)
Exon 1.3b (A:37-107 | B:37-107 | C:37-107 | D...)
Exon 1.4 (A:108-126 (gaps) | B:108-126 (gaps...)
Exon 1.5 (A:126-179 (gaps) | B:126-179 (gaps...)
Exon 1.6 (A:180-207 (gaps) | B:180-207 (gaps...)
Exon 1.7b (A:208-266 (gaps) | B:208-266 (gaps...)
Exon 1.8b (A:266-332 | B:266-332 | C:266-332 ...)
Exon 1.9a (A:333-343 | B:333-345 | C:333-344 ...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.3b
3: Boundary 1.3b/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7b
7: Boundary 1.7b/1.8b
8: Boundary 1.8b/1.9a
9: Boundary 1.9a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000374855
1a
ENSE00001831927
chr9:
104198105-104197991
115
ALDOB_HUMAN
-
0
0
-
-
1.2b
ENST00000374855
2b
ENSE00002201261
chr9:
104193179-104193058
122
ALDOB_HUMAN
1-38
38
8
A:6-37
B:4-37
C:6-37
D:6-37
W:6-37
X:5-37
Y:5-37
Z:6-37
32
34
32
32
32
33
33
32
1.3b
ENST00000374855
3b
ENSE00000926603
chr9:
104192248-104192037
212
ALDOB_HUMAN
38-108
71
8
A:37-107
B:37-107
C:37-107
D:37-107
W:37-107
X:37-107
Y:37-107
Z:37-107
71
71
71
71
71
71
71
71
1.4
ENST00000374855
4
ENSE00000926602
chr9:
104190805-104190751
55
ALDOB_HUMAN
109-127
19
8
A:108-126 (gaps)
B:108-126 (gaps)
C:108-126 (gaps)
D:108-126 (gaps)
W:108-126 (gaps)
X:108-126 (gaps)
Y:108-126 (gaps)
Z:108-126 (gaps)
19
19
19
19
19
19
19
19
1.5
ENST00000374855
5
ENSE00000926601
chr9:
104189924-104189764
161
ALDOB_HUMAN
127-180
54
8
A:126-179 (gaps)
B:126-179 (gaps)
C:126-179
D:126-179 (gaps)
W:126-179 (gaps)
X:126-179
Y:126-179 (gaps)
Z:126-179 (gaps)
54
54
54
54
54
54
54
54
1.6
ENST00000374855
6
ENSE00001662738
chr9:
104188920-104188837
84
ALDOB_HUMAN
181-208
28
8
A:180-207 (gaps)
B:180-207 (gaps)
C:180-207 (gaps)
D:180-207 (gaps)
W:180-207 (gaps)
X:180-207
Y:180-207 (gaps)
Z:180-207 (gaps)
28
28
28
28
28
28
28
28
1.7b
ENST00000374855
7b
ENSE00000926599
chr9:
104187909-104187735
175
ALDOB_HUMAN
209-267
59
8
A:208-266 (gaps)
B:208-266 (gaps)
C:208-266 (gaps)
D:208-266 (gaps)
W:208-266 (gaps)
X:208-266 (gaps)
Y:208-266 (gaps)
Z:208-266 (gaps)
59
59
59
59
59
59
59
59
1.8b
ENST00000374855
8b
ENSE00000926598
chr9:
104187324-104187125
200
ALDOB_HUMAN
267-333
67
8
A:266-332
B:266-332
C:266-332
D:266-332
W:266-332
X:266-332
Y:266-332
Z:266-332
67
67
67
67
67
67
67
67
1.9a
ENST00000374855
9a
ENSE00001825604
chr9:
104184186-104182860
1327
ALDOB_HUMAN
334-364
31
8
A:333-343
B:333-345
C:333-344
D:333-345
W:333-343
X:333-344
Y:333-345
Z:333-342
11
13
12
13
11
12
13
10
[
close EXON info
]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1xdlb_ (B:)
1b: SCOP_d1xdld_ (D:)
1c: SCOP_d1xdlw_ (W:)
1d: SCOP_d1xdlx_ (X:)
1e: SCOP_d1xdly_ (Y:)
1f: SCOP_d1xdlz_ (Z:)
1g: SCOP_d1xdlc_ (C:)
2a: SCOP_d1xdla1 (A:6-343)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
Fructose-1,6-bisphosphate aldolase
(39)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1xdlb_
B:
1b
d1xdld_
D:
1c
d1xdlw_
W:
1d
d1xdlx_
X:
1e
d1xdly_
Y:
1f
d1xdlz_
Z:
1g
d1xdlc_
C:
Human (Homo sapiens), liver isozyme [TaxId: 9606]
(2)
2a
d1xdla1
A:6-343
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1xdlW00 (W:6-343)
1b: CATH_1xdlZ00 (Z:6-342)
1c: CATH_1xdlY00 (Y:5-345)
1d: CATH_1xdlA00 (A:6-343)
1e: CATH_1xdlC00 (C:6-344)
1f: CATH_1xdlX00 (X:5-344)
1g: CATH_1xdlD00 (D:6-345)
1h: CATH_1xdlB00 (B:4-345)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Human (Homo sapiens)
(78)
1a
1xdlW00
W:6-343
1b
1xdlZ00
Z:6-342
1c
1xdlY00
Y:5-345
1d
1xdlA00
A:6-343
1e
1xdlC00
C:6-344
1f
1xdlX00
X:5-344
1g
1xdlD00
D:6-345
1h
1xdlB00
B:4-345
[
close CATH info
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Glycolytic_1xdlZ01 (Z:14-342)
1b: PFAM_Glycolytic_1xdlZ02 (Z:14-342)
1c: PFAM_Glycolytic_1xdlZ03 (Z:14-342)
1d: PFAM_Glycolytic_1xdlZ04 (Z:14-342)
1e: PFAM_Glycolytic_1xdlZ05 (Z:14-342)
1f: PFAM_Glycolytic_1xdlZ06 (Z:14-342)
1g: PFAM_Glycolytic_1xdlZ07 (Z:14-342)
1h: PFAM_Glycolytic_1xdlZ08 (Z:14-342)
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(
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(
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(
)
Clan
:
no clan defined [family: Glycolytic]
(21)
Family
:
Glycolytic
(21)
Homo sapiens (Human)
(4)
1a
Glycolytic-1xdlZ01
Z:14-342
1b
Glycolytic-1xdlZ02
Z:14-342
1c
Glycolytic-1xdlZ03
Z:14-342
1d
Glycolytic-1xdlZ04
Z:14-342
1e
Glycolytic-1xdlZ05
Z:14-342
1f
Glycolytic-1xdlZ06
Z:14-342
1g
Glycolytic-1xdlZ07
Z:14-342
1h
Glycolytic-1xdlZ08
Z:14-342
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