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1XDI
Asym. Unit
Info
Asym.Unit (147 KB)
Biol.Unit 1 (277 KB)
Biol.Unit 2 (141 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LPDA (RV3303C) FROM MYCOBACTERIUM TUBERCULOSIS
Authors
:
A. Argyrou, M. W. Vetting, J. S. Blanchard
Date
:
06 Sep 04 (Deposition) - 19 Oct 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.81
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (1x)
Keywords
:
Mycobacterium Tuberculosis, Reductase, Fad, Nad, Nadp, Unknown Function
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Argyrou, M. W. Vetting, J. S. Blanchard
Characterization Of A New Member Of The Flavoprotein Disulfide Reductase Family Of Enzymes From Mycobacterium Tuberculosis
J. Biol. Chem. V. 279 52694 2004
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
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No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:9 , GLY A:10 , GLY A:11 , PRO A:12 , ALA A:13 , ILE A:34 , ASP A:35 , CYS A:36 , ASP A:37 , GLY A:41 , ALA A:42 , ALA A:43 , ASP A:47 , CYS A:48 , SER A:51 , LYS A:52 , GLY A:115 , ARG A:116 , GLY A:117 , ALA A:151 , THR A:152 , GLY A:153 , TRP A:172 , LEU A:284 , GLY A:316 , ASP A:317 , PRO A:323 , LEU A:324 , ALA A:325 , SER A:326 , PHE A:357 , HOH A:1015 , HOH A:1021 , TYR B:450 , HOH B:1049
BINDING SITE FOR RESIDUE FAD A 999
2
AC2
SOFTWARE
TYR A:450 , GLY B:9 , GLY B:11 , PRO B:12 , ALA B:13 , ILE B:34 , ASP B:35 , CYS B:36 , ASP B:37 , GLY B:41 , ALA B:42 , ALA B:43 , ASP B:47 , CYS B:48 , SER B:51 , LYS B:52 , ARG B:116 , GLY B:117 , ALA B:151 , THR B:152 , GLY B:153 , TRP B:172 , LEU B:284 , GLY B:316 , ASP B:317 , PRO B:323 , LEU B:324 , ALA B:325 , SER B:326 , PHE B:357 , HOH B:1024 , HOH B:1027
BINDING SITE FOR RESIDUE FAD B 999
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1xdia2 (A:349-466)
1b: SCOP_d1xdib2 (B:349-466)
2a: SCOP_d1xdia1 (A:2-161,A:276-348)
2b: SCOP_d1xdib1 (B:2-161,B:276-348)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
Dihydrolipoamide dehydrogenase
(10)
Mycobacterium tuberculosis [TaxId: 1773]
(1)
1a
d1xdia2
A:349-466
1b
d1xdib2
B:349-466
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
Dihydrolipoamide dehydrogenase
(10)
Mycobacterium tuberculosis [TaxId: 1773]
(1)
2a
d1xdia1
A:2-161,A:276-348
2b
d1xdib1
B:2-161,B:276-348
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1xdiA03 (A:345-466)
1b: CATH_1xdiB03 (B:345-466)
2a: CATH_1xdiA01 (A:2-156,A:276-344)
2b: CATH_1xdiA02 (A:157-275)
2c: CATH_1xdiB02 (B:157-275)
2d: CATH_1xdiB01 (B:2-156,B:276-344)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(3)
1a
1xdiA03
A:345-466
1b
1xdiB03
B:345-466
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(4)
2a
1xdiA01
A:2-156,A:276-344
2b
1xdiA02
A:157-275
2c
1xdiB02
B:157-275
2d
1xdiB01
B:2-156,B:276-344
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Pyr_redox_1xdiB01 (B:184-264)
1b: PFAM_Pyr_redox_1xdiB02 (B:184-264)
2a: PFAM_Pyr_redox_2_1xdiB03 (B:4-322)
2b: PFAM_Pyr_redox_2_1xdiB04 (B:4-322)
3a: PFAM_Pyr_redox_dim_1xdiB05 (B:352-461)
3b: PFAM_Pyr_redox_dim_1xdiB06 (B:352-461)
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)
Clan
:
NADP_Rossmann
(1239)
Family
:
Pyr_redox
(62)
Mycobacterium tuberculosis
(1)
1a
Pyr_redox-1xdiB01
B:184-264
1b
Pyr_redox-1xdiB02
B:184-264
Family
:
Pyr_redox_2
(69)
Mycobacterium tuberculosis
(1)
2a
Pyr_redox_2-1xdiB03
B:4-322
2b
Pyr_redox_2-1xdiB04
B:4-322
Clan
:
no clan defined [family: Pyr_redox_dim]
(44)
Family
:
Pyr_redox_dim
(44)
Mycobacterium tuberculosis
(1)
3a
Pyr_redox_dim-1xdiB05
B:352-461
3b
Pyr_redox_dim-1xdiB06
B:352-461
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Asym.Unit (147 KB)
Header - Asym.Unit
Biol.Unit 1 (277 KB)
Header - Biol.Unit 1
Biol.Unit 2 (141 KB)
Header - Biol.Unit 2
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