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1XB2
Biol. Unit 1
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Asym.Unit (114 KB)
Biol.Unit 1 (109 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BOS TAURUS MITOCHONDRIAL ELONGATION FACTOR TU/TS COMPLEX
Authors
:
M. G. Jeppesen, T. Navratil, L. L. Spremulli, J. Nyborg
Date
:
27 Aug 04 (Deposition) - 23 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Protein Complex, Translation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. G. Jeppesen, T. Navratil, L. L. Spremulli, J. Nyborg
Crystal Structure Of The Bovine Mitochondrial Elongation Factor Tu. Ts Complex
J. Biol. Chem. V. 280 5071 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 11)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
11
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_EFTU_BOVIN_002 (Q355H, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_EFTU_BOVIN_002
*
Q
355
H
EFTU_BOVIN
---
---
A
Q
355
H
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: EF_TS_1 (B:66-81)
2: EF_TS_2 (B:133-143)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_TS_1
PS01126
Elongation factor Ts signature 1.
EFTS_BOVIN
66-81
1
B:66-81
2
EF_TS_2
PS01127
Elongation factor Ts signature 2.
EFTS_BOVIN
133-143
1
B:133-143
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(5, 6)
Info
All SCOP Domains
1a: SCOP_d1xb2b1 (B:56-111)
2a: SCOP_d1xb2a2 (A:349-452)
3a: SCOP_d1xb2a1 (A:251-348)
4a: SCOP_d1xb2b2 (B:112-222)
4b: SCOP_d1xb2b3 (B:223-331)
5a: SCOP_d1xb2a3 (A:56-250)
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)
(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
RuvA C-terminal domain-like
(106)
Superfamily
:
UBA-like
(64)
Family
:
TS-N domain
(4)
Protein domain
:
Elongation factor Ts (EF-Ts), N-terminal domain
(4)
Cow (Bos taurus), mitochondrial [TaxId: 9913]
(1)
1a
d1xb2b1
B:56-111
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Elongation factor Tu (EF-Tu)
(17)
Cow (Bos taurus), mitochondrial [TaxId: 9913]
(2)
2a
d1xb2a2
A:349-452
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor Tu (EF-Tu), domain 2
(17)
Cow (Bos taurus), mitochondrial [TaxId: 9913]
(2)
3a
d1xb2a1
A:251-348
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
EF-Ts domain-like
(5)
Superfamily
:
Elongation factor Ts (EF-Ts), dimerisation domain
(4)
Family
:
Elongation factor Ts (EF-Ts), dimerisation domain
(4)
Protein domain
:
Elongation factor Ts (EF-Ts), dimerisation domain
(4)
Cow (Bos taurus), mitochondrial [TaxId: 9913]
(1)
4a
d1xb2b2
B:112-222
4b
d1xb2b3
B:223-331
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor Tu (EF-Tu), N-terminal (G) domain
(19)
Cow (Bos taurus), mitochondrial [TaxId: 9913]
(2)
5a
d1xb2a3
A:56-250
[
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1xb2A01 (A:56-247)
2a: CATH_1xb2B01 (B:56-115)
3a: CATH_1xb2A03 (A:350-441,A:443-452)
3b: CATH_1xb2A02 (A:257-341)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Cattle (Bos taurus)
(17)
1a
1xb2A01
A:56-247
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
DNA helicase RuvA subunit, C-terminal domain
(65)
Cattle (Bos taurus)
(1)
2a
1xb2B01
B:56-115
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Cattle (Bos taurus)
(2)
3a
1xb2A03
A:350-441,A:443-452
3b
1xb2A02
A:257-341
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Pfam Domains
(5, 6)
Info
all PFAM domains
1a: PFAM_GTP_EFTU_1xb2A01 (A:56-249)
2a: PFAM_UBA_1xb2B01 (B:58-95)
3a: PFAM_EF_TS_1xb2B02 (B:290-330)
3b: PFAM_EF_TS_1xb2B03 (B:290-330)
4a: PFAM_GTP_EFTU_D2_1xb2A02 (A:272-341)
5a: PFAM_GTP_EFTU_D3_1xb2A03 (A:345-440)
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Clans
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)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
GTP_EFTU
(39)
Bos taurus (Bovine)
(1)
1a
GTP_EFTU-1xb2A01
A:56-249
Clan
:
UBA
(32)
Family
:
UBA
(23)
Bos taurus (Bovine)
(1)
2a
UBA-1xb2B01
B:58-95
Clan
:
no clan defined [family: EF_TS]
(2)
Family
:
EF_TS
(2)
Bos taurus (Bovine)
(1)
3a
EF_TS-1xb2B02
B:290-330
3b
EF_TS-1xb2B03
B:290-330
Clan
:
no clan defined [family: GTP_EFTU_D2]
(39)
Family
:
GTP_EFTU_D2
(39)
Bos taurus (Bovine)
(1)
4a
GTP_EFTU_D2-1xb2A02
A:272-341
Clan
:
no clan defined [family: GTP_EFTU_D3]
(11)
Family
:
GTP_EFTU_D3
(11)
Bos taurus (Bovine)
(1)
5a
GTP_EFTU_D3-1xb2A03
A:345-440
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