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1XB1
Biol. Unit 2
Info
Asym.Unit (111 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (202 KB)
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(1)
Title
:
THE STRUCTURE OF THE BIR DOMAIN OF IAP-LIKE PROTEIN 2
Authors
:
H. Shin, M. Renatus, B. P. Eckelman, V. A. Nunes, C. A. M. Sampaio, G. S. Salvesen
Date
:
27 Aug 04 (Deposition) - 02 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: A,B,C,D,E,F,G,H,I,J,K,L (2x)
Keywords
:
Apoptosis, Iap, Caspase Inhibition, Smac, Diabolo
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Shin, M. Renatus, B. P. Eckelman, V. A. Nunes, C. A. M. Sampaio, G. S. Salvesen
The Bir Domain Of Iap-Like Protein 2 Is Conformationally Unstable: Implications For Caspase Inhibition
Biochem. J. V. 385 1 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
1m: ZINC ION (ZNm)
1n: ZINC ION (ZNn)
1o: ZINC ION (ZNo)
1p: ZINC ION (ZNp)
1q: ZINC ION (ZNq)
1r: ZINC ION (ZNr)
1s: ZINC ION (ZNs)
1t: ZINC ION (ZNt)
1u: ZINC ION (ZNu)
1v: ZINC ION (ZNv)
1w: ZINC ION (ZNw)
View:
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:333 , HOH B:70 , HIS F:336
BINDING SITE FOR RESIDUE ZN A 400
02
AC2
SOFTWARE
HIS A:302 , GLU A:332 , HOH B:149
BINDING SITE FOR RESIDUE ZN A 401
03
AC3
SOFTWARE
GLU A:266 , HIS B:343 , THR B:356 , GLU C:295
BINDING SITE FOR RESIDUE ZN B 402
04
AC4
SOFTWARE
CYS A:300 , CYS A:303 , HIS A:320 , CYS A:327
BINDING SITE FOR RESIDUE ZN A 403
05
AC5
SOFTWARE
HIS B:302 , GLU B:332 , GLU E:349
BINDING SITE FOR RESIDUE ZN B 500
06
AC6
SOFTWARE
GLU B:266 , HIS C:343
BINDING SITE FOR RESIDUE ZN B 501
07
AC7
SOFTWARE
GLU B:333 , HOH E:156 , HIS E:336
BINDING SITE FOR RESIDUE ZN B 502
08
AC8
SOFTWARE
GLU C:333 , HIS D:336
BINDING SITE FOR RESIDUE ZN C 600
09
AC9
SOFTWARE
HOH C:46 , HIS C:302 , GLU C:332
BINDING SITE FOR RESIDUE ZN C 601
10
BC1
SOFTWARE
GLU C:266 , HIS D:343
BINDING SITE FOR RESIDUE ZN C 602
11
BC2
SOFTWARE
CYS C:300 , CYS C:303 , HIS C:320 , CYS C:327
BINDING SITE FOR RESIDUE ZN C 603
12
BC3
SOFTWARE
HIS C:336 , GLU D:333
BINDING SITE FOR RESIDUE ZN D 700
13
BC4
SOFTWARE
HIS D:302 , GLU D:332
BINDING SITE FOR RESIDUE ZN D 701
14
BC5
SOFTWARE
GLU D:266 , HIS E:343 , THR E:356
BINDING SITE FOR RESIDUE ZN E 702
15
BC6
SOFTWARE
CYS D:300 , CYS D:303 , HIS D:320 , CYS D:327
BINDING SITE FOR RESIDUE ZN D 703
16
BC7
SOFTWARE
HIS B:336 , GLU E:333
BINDING SITE FOR RESIDUE ZN E 800
17
BC8
SOFTWARE
GLU B:349 , HIS E:302 , GLU E:332
BINDING SITE FOR RESIDUE ZN E 801
18
BC9
SOFTWARE
HOH E:9 , GLU E:266 , HIS F:343
BINDING SITE FOR RESIDUE ZN F 802
19
CC1
SOFTWARE
CYS E:300 , CYS E:303 , HIS E:320 , CYS E:327
BINDING SITE FOR RESIDUE ZN E 803
20
CC2
SOFTWARE
HIS A:336 , GLU F:333
BINDING SITE FOR RESIDUE ZN F 900
21
CC3
SOFTWARE
HIS F:302 , GLU F:332
BINDING SITE FOR RESIDUE ZN F 901
22
CC4
SOFTWARE
HIS A:343 , HOH F:39 , GLU F:266
BINDING SITE FOR RESIDUE ZN A 902
23
CC5
SOFTWARE
CYS F:300 , CYS F:303 , HIS F:320 , CYS F:327
BINDING SITE FOR RESIDUE ZN F 903
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: BIR_REPEAT_1 (A:265-330,B:265-330,C:265-330,D:26...)
2: BIR_REPEAT_2 (A:268-331,B:268-331,C:268-331,D:26...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIR_REPEAT_1
PS01282
BIR repeat.
BIRC8_HUMAN
4-69
12
A:265-330
B:265-330
C:265-330
D:265-330
E:265-330
F:265-330
2
BIR_REPEAT_2
PS50143
BIR repeat profile.
BIRC8_HUMAN
7-70
12
A:268-331
B:268-331
C:268-331
D:268-331
E:268-331
F:268-331
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1xb1a_ (A:)
1b: SCOP_d1xb1e_ (E:)
1c: SCOP_d1xb1f_ (F:)
1d: SCOP_d1xb1b_ (B:)
1e: SCOP_d1xb1c_ (C:)
1f: SCOP_d1xb1d_ (D:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Inhibitor of apoptosis (IAP) repeat
(71)
Superfamily
:
Inhibitor of apoptosis (IAP) repeat
(71)
Family
:
Inhibitor of apoptosis (IAP) repeat
(70)
Protein domain
:
BIR-containing protein 8
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1xb1a_
A:
1b
d1xb1e_
E:
1c
d1xb1f_
F:
1d
d1xb1b_
B:
1e
d1xb1c_
C:
1f
d1xb1d_
D:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1xb1B00 (B:255-356)
1b: CATH_1xb1E00 (E:255-356)
1c: CATH_1xb1A00 (A:255-344)
1d: CATH_1xb1C00 (C:255-344)
1e: CATH_1xb1D00 (D:255-344)
1f: CATH_1xb1F00 (F:255-343)
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Architectures
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Homologous Superfamily
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Human (Homo sapiens)
(35)
1a
1xb1B00
B:255-356
1b
1xb1E00
E:255-356
1c
1xb1A00
A:255-344
1d
1xb1C00
C:255-344
1e
1xb1D00
D:255-344
1f
1xb1F00
F:255-343
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (111 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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