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1XB0
Asym. Unit
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Asym.Unit (115 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
STRUCTURE OF THE BIR DOMAIN OF IAP-LIKE PROTEIN 2
Authors
:
H. Shin, M. Renatus, B. P. Eckelman, V. A. Nunes, C. A. M. Sampaio, G. S. Salvesen
Date
:
27 Aug 04 (Deposition) - 02 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Smac, Diablo, Apoptosis, Caspase Inhibition, Xiap
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Shin, M. Renatus, B. P. Eckelman, V. A. Nunes, C. A. M. Sampaio, G. S. Salvesen
The Bir Domain Of Iap-Like Protein 2 Is Conformationally Unstable: Implications For Caspase Inhibition
Biochem. J. V. 385 1 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
1m: ZINC ION (ZNm)
1n: ZINC ION (ZNn)
1o: ZINC ION (ZNo)
1p: ZINC ION (ZNp)
1q: ZINC ION (ZNq)
1r: ZINC ION (ZNr)
1s: ZINC ION (ZNs)
1t: ZINC ION (ZNt)
1u: ZINC ION (ZNu)
1v: ZINC ION (ZNv)
1w: ZINC ION (ZNw)
1x: ZINC ION (ZNx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
24
Ligand/Ion
ZINC ION
[
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]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:266 , HIS B:343 , THR B:356 , HOH B:534
BINDING SITE FOR RESIDUE ZN B 402
02
AC2
SOFTWARE
CYS A:300 , CYS A:303 , HIS A:320 , CYS A:327
BINDING SITE FOR RESIDUE ZN A 403
03
AC3
SOFTWARE
HIS A:302 , GLU A:332 , HOH A:938
BINDING SITE FOR RESIDUE ZN A 401
04
AC4
SOFTWARE
GLU A:333 , HOH A:944 , HOH B:543 , HIS C:336
BINDING SITE FOR RESIDUE ZN A 400
05
AC5
SOFTWARE
GLU B:333 , HIS B:336 , ASN B:340 , HOH B:548
BINDING SITE FOR RESIDUE ZN B 500
06
AC6
SOFTWARE
HIS B:302 , GLU B:332
BINDING SITE FOR RESIDUE ZN B 501
07
AC7
SOFTWARE
GLU B:266 , HOH B:557 , HIS C:343 , HOH C:636
BINDING SITE FOR RESIDUE ZN C 502
08
AC8
SOFTWARE
CYS B:300 , CYS B:303 , HIS B:320 , CYS B:327
BINDING SITE FOR RESIDUE ZN B 503
09
AC9
SOFTWARE
HIS A:336 , GLU C:333 , HOH C:608
BINDING SITE FOR RESIDUE ZN C 600
10
BC1
SOFTWARE
HIS C:302 , GLU C:332 , HOH C:641
BINDING SITE FOR RESIDUE ZN C 601
11
BC2
SOFTWARE
GLU C:266 , HOH C:628 , HIS D:343 , HOH D:734
BINDING SITE FOR RESIDUE ZN D 602
12
BC3
SOFTWARE
CYS C:300 , CYS C:303 , HIS C:320 , CYS C:327
BINDING SITE FOR RESIDUE ZN C 603
13
BC4
SOFTWARE
GLU D:333 , HIS F:336 , HOH F:937 , HOH F:959
BINDING SITE FOR RESIDUE ZN D 700
14
BC5
SOFTWARE
HIS D:302 , GLU D:332 , HOH D:718
BINDING SITE FOR RESIDUE ZN D 701
15
BC6
SOFTWARE
GLU D:266 , HOH D:733 , HIS E:343 , HOH E:846
BINDING SITE FOR RESIDUE ZN E 702
16
BC7
SOFTWARE
CYS D:300 , CYS D:303 , HIS D:320 , CYS D:327
BINDING SITE FOR RESIDUE ZN D 703
17
BC8
SOFTWARE
GLU E:333 , HIS E:336 , HOH F:905
BINDING SITE FOR RESIDUE ZN E 800
18
BC9
SOFTWARE
HIS E:302 , GLU E:332 , HOH E:834
BINDING SITE FOR RESIDUE ZN E 801
19
CC1
SOFTWARE
GLU A:295 , GLU E:266 , HIS F:343 , THR F:356
BINDING SITE FOR RESIDUE ZN F 802
20
CC2
SOFTWARE
CYS E:300 , CYS E:303 , HIS E:320 , CYS E:327
BINDING SITE FOR RESIDUE ZN E 803
21
CC3
SOFTWARE
HIS D:336 , GLU F:333 , HOH F:936
BINDING SITE FOR RESIDUE ZN F 900
22
CC4
SOFTWARE
HIS F:302 , GLU F:332
BINDING SITE FOR RESIDUE ZN F 901
23
CC5
SOFTWARE
HIS A:343 , HOH A:933 , GLU F:266 , HOH F:931
BINDING SITE FOR RESIDUE ZN A 902
24
CC6
SOFTWARE
CYS F:300 , CYS F:303 , HIS F:320 , CYS F:327
BINDING SITE FOR RESIDUE ZN F 903
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: BIR_REPEAT_1 (A:265-330,B:265-330,C:265-330,D:26...)
2: BIR_REPEAT_2 (A:268-331,B:268-331,C:268-331,D:26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BIR_REPEAT_1
PS01282
BIR repeat.
BIRC8_HUMAN
4-69
6
A:265-330
B:265-330
C:265-330
D:265-330
E:265-330
F:265-330
2
BIR_REPEAT_2
PS50143
BIR repeat profile.
BIRC8_HUMAN
7-70
6
A:268-331
B:268-331
C:268-331
D:268-331
E:268-331
F:268-331
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1xb0a_ (A:)
1b: SCOP_d1xb0b_ (B:)
1c: SCOP_d1xb0c_ (C:)
1d: SCOP_d1xb0d_ (D:)
1e: SCOP_d1xb0e_ (E:)
1f: SCOP_d1xb0f_ (F:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Inhibitor of apoptosis (IAP) repeat
(71)
Superfamily
:
Inhibitor of apoptosis (IAP) repeat
(71)
Family
:
Inhibitor of apoptosis (IAP) repeat
(70)
Protein domain
:
BIR-containing protein 8
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1xb0a_
A:
1b
d1xb0b_
B:
1c
d1xb0c_
C:
1d
d1xb0d_
D:
1e
d1xb0e_
E:
1f
d1xb0f_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1xb0B00 (B:256-356)
1b: CATH_1xb0F00 (F:254-356)
1c: CATH_1xb0E00 (E:255-347)
1d: CATH_1xb0A00 (A:254-345)
1e: CATH_1xb0C00 (C:255-345)
1f: CATH_1xb0D00 (D:255-345)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Homologous Superfamily
:
Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A
(42)
Human (Homo sapiens)
(35)
1a
1xb0B00
B:256-356
1b
1xb0F00
F:254-356
1c
1xb0E00
E:255-347
1d
1xb0A00
A:254-345
1e
1xb0C00
C:255-345
1f
1xb0D00
D:255-345
[
close CATH info
]
Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_BIR_1xb0F01 (F:268-331)
1b: PFAM_BIR_1xb0F02 (F:268-331)
1c: PFAM_BIR_1xb0F03 (F:268-331)
1d: PFAM_BIR_1xb0F04 (F:268-331)
1e: PFAM_BIR_1xb0F05 (F:268-331)
1f: PFAM_BIR_1xb0F06 (F:268-331)
2a: PFAM_Smac_DIABLO_1xb0L01 (L:901-904)
2b: PFAM_Smac_DIABLO_1xb0L02 (L:901-904)
2c: PFAM_Smac_DIABLO_1xb0L03 (L:901-904)
2d: PFAM_Smac_DIABLO_1xb0L04 (L:901-904)
2e: PFAM_Smac_DIABLO_1xb0L05 (L:901-904)
2f: PFAM_Smac_DIABLO_1xb0L06 (L:901-904)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
BIR-like
(25)
Family
:
BIR
(25)
Homo sapiens (Human)
(24)
1a
BIR-1xb0F01
F:268-331
1b
BIR-1xb0F02
F:268-331
1c
BIR-1xb0F03
F:268-331
1d
BIR-1xb0F04
F:268-331
1e
BIR-1xb0F05
F:268-331
1f
BIR-1xb0F06
F:268-331
Clan
:
no clan defined [family: Smac_DIABLO]
(2)
Family
:
Smac_DIABLO
(2)
Homo sapiens (Human)
(2)
2a
Smac_DIABLO-1xb0L01
L:901-904
2b
Smac_DIABLO-1xb0L02
L:901-904
2c
Smac_DIABLO-1xb0L03
L:901-904
2d
Smac_DIABLO-1xb0L04
L:901-904
2e
Smac_DIABLO-1xb0L05
L:901-904
2f
Smac_DIABLO-1xb0L06
L:901-904
[
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Asym.Unit (115 KB)
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