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1XAF
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION YFIH FROM SHIGELLA FLEXNERI 2A STR. 2457T
Authors
:
Y. Kim, N. Maltseva, I. Dementieva, F. Collart, A. Joachimiak, Midwest For Structural Genomics (Mcsg)
Date
:
25 Aug 04 (Deposition) - 31 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.01
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Protein Structure Initiative, Mcsg, Hypothetical Protein, Yfih, Shigella Flexneri 2A Str. 2457T, Psi, Midwest Center For Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, N. Maltseva, I. Dementieva, F. Collart, D. Holzle, A. Joachimiak
Crystal Structure Of Hypothetical Protein Yfih From Shigell Flexneri At 2 A Resolution.
Proteins V. 63 1097 2006
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
5
Ligand/Ion
ACETATE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
4
ZN
8
Ligand/Ion
ZINC ION
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:71 , CYS A:107 , HIS A:124 , ACT A:512
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
HIS A:46 , GLU A:147 , GLU A:208 , HOH A:640
BINDING SITE FOR RESIDUE ZN A 502
03
AC3
SOFTWARE
CYS A:216 , THR A:219 , ACT A:514 , HOH A:538
BINDING SITE FOR RESIDUE ZN A 503
04
AC4
SOFTWARE
HIS A:186 , HOH A:646 , HIS B:39 , HOH B:666
BINDING SITE FOR RESIDUE ZN A 504
05
AC5
SOFTWARE
HIS B:71 , CYS B:107 , HIS B:124 , ACT B:513
BINDING SITE FOR RESIDUE ZN B 505
06
AC6
SOFTWARE
HIS B:46 , GLU B:208
BINDING SITE FOR RESIDUE ZN B 506
07
AC7
SOFTWARE
CYS B:216 , THR B:219 , ACT B:515 , ACT B:516
BINDING SITE FOR RESIDUE ZN B 507
08
AC8
SOFTWARE
HIS A:39 , HIS B:186 , HOH B:562 , HOH B:657
BINDING SITE FOR RESIDUE ZN A 508
09
AC9
SOFTWARE
HIS A:71 , THR A:104 , ALA A:105 , ASP A:106 , CYS A:107 , HIS A:124 , ARG A:235 , ZN A:501
BINDING SITE FOR RESIDUE ACT A 512
10
BC1
SOFTWARE
HIS B:71 , THR B:104 , ALA B:105 , CYS B:107 , HIS B:124 , ZN B:505
BINDING SITE FOR RESIDUE ACT B 513
11
BC2
SOFTWARE
GLY A:158 , PRO A:159 , ARG A:160 , CYS A:216 , THR A:219 , ZN A:503 , HOH A:541
BINDING SITE FOR RESIDUE ACT A 514
12
BC3
SOFTWARE
HIS A:39 , ARG B:160 , ALA B:161 , THR B:219 , ZN B:507 , ACT B:516
BINDING SITE FOR RESIDUE ACT B 515
13
BC4
SOFTWARE
GLY B:158 , PRO B:159 , ARG B:160 , CYS B:216 , THR B:219 , ZN B:507 , ACT B:515
BINDING SITE FOR RESIDUE ACT B 516
14
BC5
SOFTWARE
GLY A:37 , ALA A:38 , HIS A:39 , ARG A:51 , MSE A:103
BINDING SITE FOR RESIDUE GOL A 510
15
BC6
SOFTWARE
GLY B:37 , ALA B:38 , HIS B:39 , ARG B:51 , MSE B:103 , HOH B:649 , HOH B:653 , HOH B:708
BINDING SITE FOR RESIDUE GOL B 511
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1xafa_ (A:)
1b: SCOP_d1xafb_ (B:)
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Classes
(
)
(
)
Folds
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CNF1/YfiH-like putative cysteine hydrolases
(10)
Superfamily
:
CNF1/YfiH-like putative cysteine hydrolases
(10)
Family
:
YfiH-like
(7)
Protein domain
:
Hypothetical protein yfiH
(4)
Shigella flexneri [TaxId: 623]
(2)
1a
d1xafa_
A:
1b
d1xafb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1xafA00 (A:2-243)
1b: CATH_1xafB00 (B:3-243)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
CNF1/YfiH-like putative cysteine hydrolases
(7)
Homologous Superfamily
:
CNF1/YfiH-like putative cysteine hydrolases
(7)
2457t (Shigella flexneri 2a str)
(1)
1a
1xafA00
A:2-243
1b
1xafB00
B:3-243
[
close CATH info
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Cu_oxidase_4_1xafB01 (B:19-242)
1b: PFAM_Cu_oxidase_4_1xafB02 (B:19-242)
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Clans
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(
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Cu-oxidase_4]
(6)
Family
:
Cu-oxidase_4
(6)
Shigella flexneri
(2)
1a
Cu-oxidase_4-1xafB01
B:19-242
1b
Cu-oxidase_4-1xafB02
B:19-242
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select residue range 5 to 10 in chain 'A'
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