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1XA6
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (68 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN BETA2-CHIMAERIN
Authors
:
B. Canagarajah, F. C. Leskow, J. Y. Ho, H. Mischak, L. F. Saidi, M. G. Kazanietz, J. H. Hurley
Date
:
25 Aug 04 (Deposition) - 23 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta2-Chimaerin, Racgap, C1, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Canagarajah, F. C. Leskow, J. Y. Ho, H. Mischak, L. F. Saidi, M. G. Kazanietz, J. H. Hurley
Structural Mechanism For Lipid Activation Of The Rac-Specific Gap, Beta2-Chimaerin.
Cell(Cambridge, Mass. ) V. 119 407 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:213 , CYS A:243 , CYS A:246 , CYS A:262
BINDING SITE FOR RESIDUE ZN A 467
2
AC2
SOFTWARE
CYS A:226 , CYS A:229 , HIS A:251 , CYS A:254
BINDING SITE FOR RESIDUE ZN A 468
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049136 (P436S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049136
P
438
S
CHIO_HUMAN
Polymorphism
34971642
A
P
436
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: SH2 (A:57-125)
2: ZF_DAG_PE_2 (A:212-262)
3: ZF_DAG_PE_1 (A:213-262)
4: RHOGAP (A:275-466)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH2
PS50001
Src homology 2 (SH2) domain profile.
CHIO_HUMAN
59-127
1
A:57-125
2
ZF_DAG_PE_2
PS50081
Zinc finger phorbol-ester/DAG-type profile.
CHIO_HUMAN
214-264
1
A:212-262
3
ZF_DAG_PE_1
PS00479
Zinc finger phorbol-ester/DAG-type signature.
CHIO_HUMAN
215-264
1
A:213-262
4
RHOGAP
PS50238
Rho GTPase-activating proteins domain profile.
CHIO_HUMAN
277-468
1
A:275-466
[
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Exons
(12, 12)
Info
All Exons
Exon 1.13b (A:21-28)
Exon 1.14b (A:28-46)
Exon 1.17b (A:47-57)
Exon 1.18c (A:57-95)
Exon 1.20h (A:95-161)
Exon 1.21g (A:209-216)
Exon 1.23 (A:217-245)
Exon 1.24 (A:245-303)
Exon 1.25b (A:303-329)
Exon 1.26c (A:329-375)
Exon 1.27a (A:375-410)
Exon 1.28d (A:410-466)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.4a/1.13b
02: Boundary 1.13b/1.14b
03: Boundary 1.14b/1.17b
04: Boundary 1.17b/1.18c
05: Boundary 1.18c/1.20h
06: Boundary 1.20h/1.21g
07: Boundary 1.21g/1.23
08: Boundary 1.23/1.24
09: Boundary 1.24/1.25b
10: Boundary 1.25b/1.26c
11: Boundary 1.26c/1.27a
12: Boundary 1.27a/1.28d
13: Boundary 1.28d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000222792
4a
ENSE00001389830
chr7:
29234028-29234606
579
CHIO_HUMAN
1-17
17
0
-
-
1.13b
ENST00000222792
13b
ENSE00001701043
chr7:
29394241-29394279
39
CHIO_HUMAN
17-30
14
1
A:21-28
8
1.14b
ENST00000222792
14b
ENSE00001716497
chr7:
29407548-29407603
56
CHIO_HUMAN
30-48
19
1
A:28-46
19
1.17b
ENST00000222792
17b
ENSE00001632805
chr7:
29433295-29433326
32
CHIO_HUMAN
49-59
11
1
A:47-57
11
1.18c
ENST00000222792
18c
ENSE00001730004
chr7:
29437989-29438102
114
CHIO_HUMAN
59-97
39
1
A:57-95
39
1.20h
ENST00000222792
20h
ENSE00000674672
chr7:
29440159-29440444
286
CHIO_HUMAN
97-192
96
1
A:95-161
67
1.21g
ENST00000222792
21g
ENSE00000674673
chr7:
29519895-29519972
78
CHIO_HUMAN
193-218
26
1
A:209-216
8
1.23
ENST00000222792
23
ENSE00001652432
chr7:
29535568-29535652
85
CHIO_HUMAN
219-247
29
1
A:217-245
29
1.24
ENST00000222792
24
ENSE00001675410
chr7:
29539483-29539656
174
CHIO_HUMAN
247-305
59
1
A:245-303
59
1.25b
ENST00000222792
25b
ENSE00001614298
chr7:
29544360-29544437
78
CHIO_HUMAN
305-331
27
1
A:303-329
27
1.26c
ENST00000222792
26c
ENSE00000674678
chr7:
29546844-29546981
138
CHIO_HUMAN
331-377
47
1
A:329-375
47
1.27a
ENST00000222792
27a
ENSE00000674679
chr7:
29548917-29549022
106
CHIO_HUMAN
377-412
36
1
A:375-410
36
1.28d
ENST00000222792
28d
ENSE00001581228
chr7:
29552180-29553944
1765
CHIO_HUMAN
412-468
57
1
A:410-466
57
[
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]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1xa6a1 (A:271-466)
2a: SCOP_d1xa6a2 (A:21-161)
3a: SCOP_d1xa6a3 (A:209-270)
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Protein Domains
(
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(
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Organisms
(
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
GTPase activation domain, GAP
(18)
Superfamily
:
GTPase activation domain, GAP
(18)
Family
:
BCR-homology GTPase activation domain (BH-domain)
(9)
Protein domain
:
Beta-chimaerin, C-terminal domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1xa6a1
A:271-466
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
SH2-like
(260)
Superfamily
:
SH2 domain
(260)
Family
:
SH2 domain
(225)
Protein domain
:
Beta-chimaerin, N-terminal domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1xa6a2
A:21-161
Class
:
Small proteins
(3458)
Fold
:
Cysteine-rich domain
(24)
Superfamily
:
Cysteine-rich domain
(24)
Family
:
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
(18)
Protein domain
:
Beta-chimaerin, middle domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
3a
d1xa6a3
A:209-270
[
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1xa6A01 (A:35-138)
2a: CATH_1xa6A02 (A:161-276)
3a: CATH_1xa6A03 (A:277-466)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
SHC Adaptor Protein
(206)
Homologous Superfamily
:
SHC Adaptor Protein
(206)
Human (Homo sapiens)
(147)
1a
1xa6A01
A:35-138
Topology
:
Wheat Germ Agglutinin (Isolectin 2); domain 1
(140)
Homologous Superfamily
:
[code=3.30.60.20, no name defined]
(15)
Human (Homo sapiens)
(5)
2a
1xa6A02
A:161-276
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Phosphatidylinositol 3-kinase; Chain A
(12)
Homologous Superfamily
:
GTPase -GAP domain
(12)
Human (Homo sapiens)
(10)
3a
1xa6A03
A:277-466
[
close CATH info
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_C1_1_1xa6A01 (A:213-265)
2a: PFAM_RhoGAP_1xa6A02 (A:289-443)
3a: PFAM_SH2_1xa6A03 (A:57-127)
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Clans
(
)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
C1
(13)
Family
:
C1_1
(10)
Homo sapiens (Human)
(4)
1a
C1_1-1xa6A01
A:213-265
Clan
:
GAP
(15)
Family
:
RhoGAP
(12)
Homo sapiens (Human)
(12)
2a
RhoGAP-1xa6A02
A:289-443
Clan
:
no clan defined [family: SH2]
(119)
Family
:
SH2
(119)
Homo sapiens (Human)
(79)
3a
SH2-1xa6A03
A:57-127
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Asymmetric Unit 1
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