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1X9Y
Biol. Unit 3
Info
Asym.Unit (233 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (60 KB)
Biol.Unit 4 (60 KB)
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(1)
Title
:
THE PROSTAPHOPAIN B STRUCTURE
Authors
:
R. Filipek, R. Szczepanowski, A. Sabat, J. Potempa, M. Bochtler
Date
:
24 Aug 04 (Deposition) - 23 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Half-Barrel, Barrel-Sandwich-Hybrid, Hydrolase
(Keyword Search:
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Reference
:
R. Filipek, R. Szczepanowski, A. Sabat, J. Potempa, M. Bochtler
Prostaphopain B Structure: A Comparison Of Proregion-Mediated And Staphostatin-Mediated Protease Inhibition.
Biochemistry V. 43 14306 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
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PROSITE Patterns/Profiles
(1, 2)
Info
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1: THIOL_PROTEASE_HIS (C:338-348)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
SSPB_STAA8
338-348
1
-
-
C:338-348
-
SSPB_STAAU
338-348
1
-
-
C:338-348
-
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1x9ya2 (A:41-211)
1b: SCOP_d1x9yb2 (B:41-211)
1c: SCOP_d1x9yc2 (C:41-211)
1d: SCOP_d1x9yd2 (D:41-211)
2a: SCOP_d1x9ya1 (A:223-393)
2b: SCOP_d1x9yb1 (B:223-393)
2c: SCOP_d1x9yc1 (C:223-393)
2d: SCOP_d1x9yd1 (D:223-393)
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Protein Domains
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Cystatin/monellin
(68)
Family
:
Staphopain B, prodomain
(1)
Protein domain
:
Staphopain B, prodomain
(1)
Staphylococcus aureus [TaxId: 1280]
(1)
1a
d1x9ya2
A:41-211
1b
d1x9yb2
B:41-211
1c
d1x9yc2
C:41-211
1d
d1x9yd2
D:41-211
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
Staphopain SspB
(3)
Staphylococcus aureus [TaxId: 1280]
(3)
2a
d1x9ya1
A:223-393
2b
d1x9yb1
B:223-393
2c
d1x9yc1
C:223-393
2d
d1x9yd1
D:223-393
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1x9yA02 (A:211-397)
1b: CATH_1x9yB02 (B:211-397)
1c: CATH_1x9yC02 (C:211-397)
1d: CATH_1x9yD02 (D:211-397)
2a: CATH_1x9yA01 (A:41-210)
2b: CATH_1x9yB01 (B:41-210)
2c: CATH_1x9yC01 (C:41-210)
2d: CATH_1x9yD01 (D:41-210)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Staphylococcus aureus. Organism_taxid: 1280.
(3)
1a
1x9yA02
A:211-397
1b
1x9yB02
B:211-397
1c
1x9yC02
C:211-397
1d
1x9yD02
D:211-397
Architecture
:
Roll
(3276)
Topology
:
prostaphopain b, domain 1
(1)
Homologous Superfamily
:
prostaphopain b, domain 1
(1)
Staphylococcus aureus. Organism_taxid: 1280.
(1)
2a
1x9yA01
A:41-210
2b
1x9yB01
B:41-210
2c
1x9yC01
C:41-210
2d
1x9yD01
D:41-210
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Peptidase_C47_1x9yD01 (D:223-393)
1b: PFAM_Peptidase_C47_1x9yD02 (D:223-393)
1c: PFAM_Peptidase_C47_1x9yD03 (D:223-393)
1d: PFAM_Peptidase_C47_1x9yD04 (D:223-393)
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Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C47
(3)
Staphylococcus aureus
(3)
1a
Peptidase_C47-1x9yD01
D:223-393
1b
Peptidase_C47-1x9yD02
D:223-393
1c
Peptidase_C47-1x9yD03
D:223-393
1d
Peptidase_C47-1x9yD04
D:223-393
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (233 KB)
Header - Asym.Unit
Biol.Unit 1 (60 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
Biol.Unit 3 (60 KB)
Header - Biol.Unit 3
Biol.Unit 4 (60 KB)
Header - Biol.Unit 4
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