PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1X9H
Asym. Unit
Info
Asym.Unit (215 KB)
Biol.Unit 1 (210 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF PHOSPHOGLUCOSE/PHOSPHOMANNOSE ISOMERASE FROM PYROBACULUM AEROPHILUM IN COMPLEX WITH FRUCTOSE 6-PHOSPHATE
Authors
:
M. K. Swan, T Hansen, P. Schoenheit, C. Davies
Date
:
21 Aug 04 (Deposition) - 07 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Enzyme, Crenarchaeon, Hyperthermophile, Pgi Superfamily, Fructose 6- Phosphate, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. K. Swan, T. Hansen, P. Schoenheit, C. Davies
Structural Basis For Phosphomannose Isomerase Activity In Phosphoglucose Isomerase From Pyrobaculum Aerophilum: A Subtle Difference Between Distantly Related Enzymes.
Biochemistry V. 43 14088 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 11)
Info
All Hetero Components
1a: FRUCTOSE -6-PHOSPHATE (F6Ra)
1b: FRUCTOSE -6-PHOSPHATE (F6Rb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
F6R
2
Ligand/Ion
FRUCTOSE -6-PHOSPHATE
2
GOL
4
Ligand/Ion
GLYCEROL
3
SO4
5
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:104 , ARG B:105
BINDING SITE FOR RESIDUE SO4 B 501
02
AC2
SOFTWARE
ARG A:299 , ARG A:300
BINDING SITE FOR RESIDUE SO4 A 502
03
AC3
SOFTWARE
ARG A:104 , ARG A:105
BINDING SITE FOR RESIDUE SO4 A 503
04
AC4
SOFTWARE
GLN A:179 , ARG A:181 , ARG A:284 , HOH A:846 , ARG B:79
BINDING SITE FOR RESIDUE SO4 A 504
05
AC5
SOFTWARE
GLN B:179 , ARG B:181 , ARG B:284 , HOH B:780 , HOH B:878 , HOH B:894
BINDING SITE FOR RESIDUE SO4 B 505
06
AC6
SOFTWARE
HIS A:219 , MET B:45 , GLY B:46 , GLY B:47 , SER B:48 , SER B:87 , TYR B:88 , SER B:89 , THR B:92 , PRO B:134 , ARG B:135 , GLU B:203 , LYS B:298 , HOH B:723 , HOH B:887 , HOH B:888
BINDING SITE FOR RESIDUE F6R B 700
07
AC7
SOFTWARE
MET A:45 , GLY A:46 , GLY A:47 , SER A:48 , SER A:87 , TYR A:88 , SER A:89 , THR A:92 , PRO A:134 , ARG A:135 , GLU A:203 , LYS A:298 , HOH A:723 , HOH A:760 , HIS B:219
BINDING SITE FOR RESIDUE F6R A 701
08
AC8
SOFTWARE
ASP A:53 , LYS A:72 , ARG A:191 , TYR A:195 , HOH A:739 , HOH A:757 , HOH A:784 , HOH A:909
BINDING SITE FOR RESIDUE GOL A 601
09
AC9
SOFTWARE
THR A:233 , GLN A:242 , HOH A:893 , HOH A:898
BINDING SITE FOR RESIDUE GOL A 602
10
BC1
SOFTWARE
SER A:89 , ASN A:91 , THR A:92 , ILE A:93 , LYS A:298 , HOH A:720 , HOH A:751 , HOH A:814 , ARG B:117
BINDING SITE FOR RESIDUE GOL A 603
11
BC2
SOFTWARE
VAL B:27 , GLU B:28 , GLU B:30 , LYS B:103 , ARG B:104 , ARG B:106
BINDING SITE FOR RESIDUE GOL B 605
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SIS (A:27-160,B:27-160)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIS
PS51464
SIS domain profile.
PGMI_PYRAE
27-160
2
A:27-160
B:27-160
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1x9ha_ (A:)
1b: SCOP_d1x9hb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SIS domain
(85)
Superfamily
:
SIS domain
(85)
Family
:
double-SIS domain
(16)
Protein domain
:
Glucose-6-phosphate isomerase, conjectural
(4)
Pyrobaculum aerophilum [TaxId: 13773]
(4)
1a
d1x9ha_
A:
1b
d1x9hb_
B:
[
close SCOP info
]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1x9hA01 (A:2-163)
1b: CATH_1x9hB01 (B:2-163)
1c: CATH_1x9hA02 (A:164-302)
1d: CATH_1x9hB02 (B:164-302)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Glucose-6-phosphate isomerase like protein; domain 1
(105)
Pyrobaculum aerophilum. Organism_taxid: 13773.
(2)
1a
1x9hA01
A:2-163
1b
1x9hB01
B:2-163
1c
1x9hA02
A:164-302
1d
1x9hB02
B:164-302
[
close CATH info
]
Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_SIS_1x9hB01 (B:34-149)
1b: PFAM_SIS_1x9hB02 (B:34-149)
2a: PFAM_bact_PGI_C_1x9hB03 (B:164-302)
2b: PFAM_bact_PGI_C_1x9hB04 (B:164-302)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SIS
(53)
Family
:
SIS
(23)
Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
(3)
1a
SIS-1x9hB01
B:34-149
1b
SIS-1x9hB02
B:34-149
Clan
:
no clan defined [family: bact-PGI_C]
(4)
Family
:
bact-PGI_C
(4)
Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
(3)
2a
bact-PGI_C-1x9hB03
B:164-302
2b
bact-PGI_C-1x9hB04
B:164-302
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (215 KB)
Header - Asym.Unit
Biol.Unit 1 (210 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1X9H
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help