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1X86
Biol. Unit 1
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Asym.Unit (349 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (92 KB)
Biol.Unit 3 (87 KB)
Biol.Unit 4 (84 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DH/PH DOMAINS OF LEUKEMIA-ASSOCIATED RHOGEF IN COMPLEX WITH RHOA
Authors
:
R. Kristelly, G. Gao, J. J. Tesmer
Date
:
17 Aug 04 (Deposition) - 21 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.22
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Helical Bundle (Dh), Beta Sandwich (Ph), Alpha/Beta (Rhoa), Signaling Protein-Membrane Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Kristelly, G. Gao, J. J. Tesmer
Structural Determinants Of Rhoa Binding And Nucleotide Exchange In Leukemia-Associated Rho Guanine-Nucleotide Exchange Factor.
J. Biol. Chem. V. 279 47352 2004
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY B:17 , LYS B:18 , THR B:19 , CYS B:20
BINDING SITE FOR RESIDUE PO4 B 401
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_020191 (F973F, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020191
Y
973
F
ARHGC_HUMAN
Polymorphism
2305013
A
F
973
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: DH_2 (A:787-977)
2: DH_1 (A:926-951)
3: PH_DOMAIN (A:1019-1132)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DH_2
PS50010
Dbl homology (DH) domain profile.
ARHGC_HUMAN
787-977
1
A:787-977
-
-
-
2
DH_1
PS00741
Dbl homology (DH) domain signature.
ARHGC_HUMAN
926-951
1
A:926-951
-
-
-
3
PH_DOMAIN
PS50003
PH domain profile.
ARHGC_HUMAN
1019-1132
1
A:1019-1132
-
-
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1x86a1 (A:766-999)
1b: SCOP_d1x86c1 (C:766-999)
1c: SCOP_d1x86e1 (E:766-996)
1d: SCOP_d1x86g1 (G:766-994)
2a: SCOP_d1x86a2 (A:1020-1133)
2b: SCOP_d1x86c2 (C:1020-1133)
2c: SCOP_d1x86e2 (E:1020-1133)
2d: SCOP_d1x86g2 (G:1020-1133)
3a: SCOP_d1x86b_ (B:)
3b: SCOP_d1x86d_ (D:)
3c: SCOP_d1x86f_ (F:)
3d: SCOP_d1x86h_ (H:)
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(
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(
)
Folds
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)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DBL homology domain (DH-domain)
(22)
Superfamily
:
DBL homology domain (DH-domain)
(22)
Family
:
DBL homology domain (DH-domain)
(19)
Protein domain
:
Rho guanine nucleotide exchange factor 12
(2)
Human (Homo sapiens), gamma isoform [TaxId: 9606]
(2)
1a
d1x86a1
A:766-999
1b
d1x86c1
C:766-999
1c
d1x86e1
E:766-996
1d
d1x86g1
G:766-994
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Rho guanine nucleotide exchange factor 12
(2)
Human (Homo sapiens), gamma isoform [TaxId: 9606]
(2)
2a
d1x86a2
A:1020-1133
2b
d1x86c2
C:1020-1133
2c
d1x86e2
E:1020-1133
2d
d1x86g2
G:1020-1133
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
RhoA
(19)
Human (Homo sapiens) [TaxId: 9606]
(19)
3a
d1x86b_
B:
3b
d1x86d_
D:
3c
d1x86f_
F:
3d
d1x86h_
H:
[
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CATH Domains
(2, 7)
Info
all CATH domains
1a: CATH_1x86B00 (B:2-181)
1b: CATH_1x86D00 (D:2-181)
1c: CATH_1x86F00 (F:3-181)
1d: CATH_1x86H00 (H:3-181)
2a: CATH_1x86E02 (E:1007-1138)
2b: CATH_1x86A02 (A:997-1138)
2c: CATH_1x86C02 (C:997-1138)
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)
Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1x86B00
B:2-181
1b
1x86D00
D:2-181
1c
1x86F00
F:3-181
1d
1x86H00
H:3-181
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
2a
1x86E02
E:1007-1138
2b
1x86A02
A:997-1138
2c
1x86C02
C:997-1138
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Ras_1x86H01 (H:7-180)
1b: PFAM_Ras_1x86H02 (H:7-180)
1c: PFAM_Ras_1x86H03 (H:7-180)
1d: PFAM_Ras_1x86H04 (H:7-180)
2a: PFAM_RhoGEF_1x86G01 (G:791-976)
2b: PFAM_RhoGEF_1x86G02 (G:791-976)
2c: PFAM_RhoGEF_1x86G03 (G:791-976)
2d: PFAM_RhoGEF_1x86G04 (G:791-976)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1x86H01
H:7-180
1b
Ras-1x86H02
H:7-180
1c
Ras-1x86H03
H:7-180
1d
Ras-1x86H04
H:7-180
Clan
:
no clan defined [family: RhoGEF]
(22)
Family
:
RhoGEF
(22)
Homo sapiens (Human)
(16)
2a
RhoGEF-1x86G01
G:791-976
2b
RhoGEF-1x86G02
G:791-976
2c
RhoGEF-1x86G03
G:791-976
2d
RhoGEF-1x86G04
G:791-976
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Asym.Unit (349 KB)
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