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Getting 'Exon' information from database.
1X86
Asym. Unit
Info
Asym.Unit (349 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (92 KB)
Biol.Unit 3 (87 KB)
Biol.Unit 4 (84 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DH/PH DOMAINS OF LEUKEMIA-ASSOCIATED RHOGEF IN COMPLEX WITH RHOA
Authors
:
R. Kristelly, G. Gao, J. J. Tesmer
Date
:
17 Aug 04 (Deposition) - 21 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.22
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Helical Bundle (Dh), Beta Sandwich (Ph), Alpha/Beta (Rhoa), Signaling Protein-Membrane Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Kristelly, G. Gao, J. J. Tesmer
Structural Determinants Of Rhoa Binding And Nucleotide Exchange In Leukemia-Associated Rho Guanine-Nucleotide Exchange Factor.
J. Biol. Chem. V. 279 47352 2004
[
close entry info
]
Hetero Components
(1, 4)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
4
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY B:17 , LYS B:18 , THR B:19 , CYS B:20
BINDING SITE FOR RESIDUE PO4 B 401
2
AC2
SOFTWARE
GLY D:17 , LYS D:18 , THR D:19 , CYS D:20
BINDING SITE FOR RESIDUE PO4 D 402
3
AC3
SOFTWARE
GLY F:14 , ALA F:15 , GLY F:17 , LYS F:18 , THR F:19
BINDING SITE FOR RESIDUE PO4 F 403
4
AC4
SOFTWARE
GLY H:17 , CYS H:20 , VAL H:35 , LYS H:118
BINDING SITE FOR RESIDUE PO4 H 404
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020191 (F973F, chain A/C/E/G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020191
Y
973
F
ARHGC_HUMAN
Polymorphism
2305013
A/C/E/G
F
973
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: DH_2 (A:787-977,C:787-977,E:787-977,G:78...)
2: DH_1 (A:926-951,C:926-951,E:926-951,G:92...)
3: PH_DOMAIN (A:1019-1132,C:1019-1132,E:1019-113...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DH_2
PS50010
Dbl homology (DH) domain profile.
ARHGC_HUMAN
787-977
4
A:787-977
C:787-977
E:787-977
G:787-977
2
DH_1
PS00741
Dbl homology (DH) domain signature.
ARHGC_HUMAN
926-951
4
A:926-951
C:926-951
E:926-951
G:926-951
3
PH_DOMAIN
PS50003
PH domain profile.
ARHGC_HUMAN
1019-1132
4
A:1019-1132
C:1019-1132
E:1019-1132
G:1019-1132
[
close PROSITE info
]
Exons
(11, 44)
Info
All Exons
Exon 1.24d (A:766-794 | C:766-794 | E:766-794 ...)
Exon 1.24f (A:794-843 | C:794-843 | E:794-843 ...)
Exon 1.25 (A:843-871 | C:843-871 | E:843-871 ...)
Exon 1.26b (A:872-913 | C:872-913 | E:872-913 ...)
Exon 1.27 (A:914-952 | C:914-952 | E:914-952 ...)
Exon 1.28 (A:952-985 | C:952-985 | E:952-985 ...)
Exon 1.29 (A:986-1011 | C:986-1011 | E:986-10...)
Exon 1.30 (A:1012-1037 | C:1012-1037 | E:1012...)
Exon 1.31 (A:1037-1093 (gaps) | C:1037-1093 (...)
Exon 1.32b (A:1093-1122 | C:1093-1122 | E:1094...)
Exon 1.33b (A:1122-1138 | C:1122-1138 | E:1122...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.24c/1.24d
02: Boundary 1.24d/1.24f
03: Boundary 1.24f/1.25
04: Boundary 1.25/1.26b
05: Boundary 1.26b/1.27
06: Boundary 1.27/1.28
07: Boundary 1.28/1.29
08: Boundary 1.29/1.30
09: Boundary 1.30/1.31
10: Boundary 1.31/1.32b
11: Boundary 1.32b/1.33b
12: Boundary 1.33b/1.34a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000397843
1a
ENSE00002172160
chr11:
120207787-120207984
198
ARHGC_HUMAN
1-11
11
0
-
-
1.3b
ENST00000397843
3b
ENSE00001364534
chr11:
120276827-120276850
24
ARHGC_HUMAN
11-19
9
0
-
-
1.4a
ENST00000397843
4a
ENSE00000990332
chr11:
120278447-120278532
86
ARHGC_HUMAN
19-48
30
0
-
-
1.4c
ENST00000397843
4c
ENSE00001530577
chr11:
120280103-120280159
57
ARHGC_HUMAN
48-67
20
0
-
-
1.5
ENST00000397843
5
ENSE00000990335
chr11:
120291462-120291560
99
ARHGC_HUMAN
67-100
34
0
-
-
1.6
ENST00000397843
6
ENSE00001125958
chr11:
120292512-120292561
50
ARHGC_HUMAN
100-116
17
0
-
-
1.7
ENST00000397843
7
ENSE00000990338
chr11:
120295067-120295124
58
ARHGC_HUMAN
117-136
20
0
-
-
1.8
ENST00000397843
8
ENSE00000990339
chr11:
120298778-120298956
179
ARHGC_HUMAN
136-195
60
0
-
-
1.9
ENST00000397843
9
ENSE00000990340
chr11:
120300149-120300226
78
ARHGC_HUMAN
196-221
26
0
-
-
1.10
ENST00000397843
10
ENSE00000990342
chr11:
120300421-120300540
120
ARHGC_HUMAN
222-261
40
0
-
-
1.11
ENST00000397843
11
ENSE00000990343
chr11:
120302480-120302620
141
ARHGC_HUMAN
262-308
47
0
-
-
1.12
ENST00000397843
12
ENSE00001205806
chr11:
120308017-120308091
75
ARHGC_HUMAN
309-333
25
0
-
-
1.13b
ENST00000397843
13b
ENSE00001205799
chr11:
120310838-120310930
93
ARHGC_HUMAN
334-364
31
0
-
-
1.14
ENST00000397843
14
ENSE00001205793
chr11:
120312416-120312526
111
ARHGC_HUMAN
365-401
37
0
-
-
1.15
ENST00000397843
15
ENSE00001205786
chr11:
120312813-120312911
99
ARHGC_HUMAN
402-434
33
0
-
-
1.16
ENST00000397843
16
ENSE00001205988
chr11:
120316131-120316173
43
ARHGC_HUMAN
435-449
15
0
-
-
1.17
ENST00000397843
17
ENSE00001205778
chr11:
120317112-120317217
106
ARHGC_HUMAN
449-484
36
0
-
-
1.18a
ENST00000397843
18a
ENSE00001125859
chr11:
120317657-120317794
138
ARHGC_HUMAN
484-530
47
0
-
-
1.19
ENST00000397843
19
ENSE00000990353
chr11:
120318583-120318615
33
ARHGC_HUMAN
530-541
12
0
-
-
1.20
ENST00000397843
20
ENSE00000990354
chr11:
120318943-120319057
115
ARHGC_HUMAN
541-579
39
0
-
-
1.21b
ENST00000397843
21b
ENSE00001205763
chr11:
120319818-120319923
106
ARHGC_HUMAN
580-615
36
0
-
-
1.22c
ENST00000397843
22c
ENSE00001125819
chr11:
120322221-120322433
213
ARHGC_HUMAN
615-686
72
0
-
-
1.23
ENST00000397843
23
ENSE00000990358
chr11:
120327827-120327959
133
ARHGC_HUMAN
686-730
45
0
-
-
1.24c
ENST00000397843
24c
ENSE00000990359
chr11:
120328430-120328465
36
ARHGC_HUMAN
730-742
13
0
-
-
1.24d
ENST00000397843
24d
ENSE00000990360
chr11:
120328789-120328943
155
ARHGC_HUMAN
742-794
53
4
A:766-794
C:766-794
E:766-794
G:766-794
29
29
29
29
1.24f
ENST00000397843
24f
ENSE00001125791
chr11:
120329883-120330029
147
ARHGC_HUMAN
794-843
50
4
A:794-843
C:794-843
E:794-843
G:794-843
50
50
50
50
1.25
ENST00000397843
25
ENSE00000990363
chr11:
120331381-120331466
86
ARHGC_HUMAN
843-871
29
4
A:843-871
C:843-871
E:843-871
G:843-871
29
29
29
29
1.26b
ENST00000397843
26b
ENSE00000990365
chr11:
120335946-120336071
126
ARHGC_HUMAN
872-913
42
4
A:872-913
C:872-913
E:872-913
G:872-913
42
42
42
42
1.27
ENST00000397843
27
ENSE00000990366
chr11:
120337903-120338017
115
ARHGC_HUMAN
914-952
39
4
A:914-952
C:914-952
E:914-952
G:914-952
39
39
39
39
1.28
ENST00000397843
28
ENSE00000990367
chr11:
120339997-120340097
101
ARHGC_HUMAN
952-985
34
4
A:952-985
C:952-985
E:952-985
G:952-985
34
34
34
34
1.29
ENST00000397843
29
ENSE00000990368
chr11:
120343759-120343836
78
ARHGC_HUMAN
986-1011
26
4
A:986-1011
C:986-1011
E:986-1011 (gaps)
G:986-994
26
26
26
9
1.30
ENST00000397843
30
ENSE00001125877
chr11:
120345269-120345344
76
ARHGC_HUMAN
1012-1037
26
4
A:1012-1037
C:1012-1037
E:1012-1037
G:1015-1037 (gaps)
26
26
26
23
1.31
ENST00000397843
31
ENSE00001430984
chr11:
120346049-120346216
168
ARHGC_HUMAN
1037-1093
57
4
A:1037-1093 (gaps)
C:1037-1093 (gaps)
E:1037-1090 (gaps)
G:1037-1093 (gaps)
57
57
54
57
1.32b
ENST00000397843
32b
ENSE00001402131
chr11:
120347370-120347457
88
ARHGC_HUMAN
1093-1122
30
4
A:1093-1122
C:1093-1122
E:1094-1122 (gaps)
G:1093-1122 (gaps)
30
30
29
30
1.33b
ENST00000397843
33b
ENSE00001125767
chr11:
120347928-120348014
87
ARHGC_HUMAN
1122-1151
30
4
A:1122-1138
C:1122-1138
E:1122-1138
G:1122-1133
17
17
17
12
1.34a
ENST00000397843
34a
ENSE00000990377
chr11:
120348156-120348235
80
ARHGC_HUMAN
1151-1178
28
0
-
-
1.35
ENST00000397843
35
ENSE00000990378
chr11:
120348865-120349098
234
ARHGC_HUMAN
1178-1256
79
0
-
-
1.36b
ENST00000397843
36b
ENSE00001125757
chr11:
120350669-120351139
471
ARHGC_HUMAN
1256-1413
158
0
-
-
1.37
ENST00000397843
37
ENSE00001401289
chr11:
120351969-120352285
317
ARHGC_HUMAN
1413-1518
106
0
-
-
1.38
ENST00000397843
38
ENSE00001369958
chr11:
120355147-120355216
70
ARHGC_HUMAN
1519-1542
24
0
-
-
1.39b
ENST00000397843
39b
ENSE00001364735
chr11:
120355776-120360645
4870
ARHGC_HUMAN
1542-1544
3
0
-
-
[
close EXON info
]
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d1x86a1 (A:766-999)
1b: SCOP_d1x86c1 (C:766-999)
1c: SCOP_d1x86e1 (E:766-996)
1d: SCOP_d1x86g1 (G:766-994)
2a: SCOP_d1x86a2 (A:1020-1133)
2b: SCOP_d1x86c2 (C:1020-1133)
2c: SCOP_d1x86e2 (E:1020-1133)
2d: SCOP_d1x86g2 (G:1020-1133)
3a: SCOP_d1x86b_ (B:)
3b: SCOP_d1x86d_ (D:)
3c: SCOP_d1x86f_ (F:)
3d: SCOP_d1x86h_ (H:)
View:
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)
Folds
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)
Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DBL homology domain (DH-domain)
(22)
Superfamily
:
DBL homology domain (DH-domain)
(22)
Family
:
DBL homology domain (DH-domain)
(19)
Protein domain
:
Rho guanine nucleotide exchange factor 12
(2)
Human (Homo sapiens), gamma isoform [TaxId: 9606]
(2)
1a
d1x86a1
A:766-999
1b
d1x86c1
C:766-999
1c
d1x86e1
E:766-996
1d
d1x86g1
G:766-994
Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Pleckstrin-homology domain (PH domain)
(102)
Protein domain
:
Rho guanine nucleotide exchange factor 12
(2)
Human (Homo sapiens), gamma isoform [TaxId: 9606]
(2)
2a
d1x86a2
A:1020-1133
2b
d1x86c2
C:1020-1133
2c
d1x86e2
E:1020-1133
2d
d1x86g2
G:1020-1133
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
RhoA
(19)
Human (Homo sapiens) [TaxId: 9606]
(19)
3a
d1x86b_
B:
3b
d1x86d_
D:
3c
d1x86f_
F:
3d
d1x86h_
H:
[
close SCOP info
]
CATH Domains
(2, 7)
Info
all CATH domains
1a: CATH_1x86B00 (B:2-181)
1b: CATH_1x86D00 (D:2-181)
1c: CATH_1x86F00 (F:3-181)
1d: CATH_1x86H00 (H:3-181)
2a: CATH_1x86E02 (E:1007-1138)
2b: CATH_1x86A02 (A:997-1138)
2c: CATH_1x86C02 (C:997-1138)
View:
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Classes
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)
Architectures
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(
)
Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1x86B00
B:2-181
1b
1x86D00
D:2-181
1c
1x86F00
F:3-181
1d
1x86H00
H:3-181
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
2a
1x86E02
E:1007-1138
2b
1x86A02
A:997-1138
2c
1x86C02
C:997-1138
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Ras_1x86H01 (H:7-180)
1b: PFAM_Ras_1x86H02 (H:7-180)
1c: PFAM_Ras_1x86H03 (H:7-180)
1d: PFAM_Ras_1x86H04 (H:7-180)
2a: PFAM_RhoGEF_1x86G01 (G:791-976)
2b: PFAM_RhoGEF_1x86G02 (G:791-976)
2c: PFAM_RhoGEF_1x86G03 (G:791-976)
2d: PFAM_RhoGEF_1x86G04 (G:791-976)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1x86H01
H:7-180
1b
Ras-1x86H02
H:7-180
1c
Ras-1x86H03
H:7-180
1d
Ras-1x86H04
H:7-180
Clan
:
no clan defined [family: RhoGEF]
(22)
Family
:
RhoGEF
(22)
Homo sapiens (Human)
(16)
2a
RhoGEF-1x86G01
G:791-976
2b
RhoGEF-1x86G02
G:791-976
2c
RhoGEF-1x86G03
G:791-976
2d
RhoGEF-1x86G04
G:791-976
[
close Pfam info
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select :A, :C
select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
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