PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1X74
Asym. Unit
Info
Asym.Unit (256 KB)
Biol.Unit 1 (127 KB)
Biol.Unit 2 (127 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ALPHA-METHYLACYL-COA RACEMASE FROM MYCOBACTERIUM TUBERCULOSIS-MUTATIONAL AND STRUCTURAL CHARACTERIZATION OF THE FOLD AND ACTIVE SITE
Authors
:
S. Kalle, P. Bhaumik, W. Schmitz, T. J. Kotti, E. Conzelmann, R. K. Wiere J. K. Hiltunen
Date
:
13 Aug 04 (Deposition) - 18 Jan 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.79
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Alpha-Methylacyl-Coa Racemase, Racemase, Coa Transferase, Coenzyme A, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Savolainen, P. Bhaumik, W. Schmitz, T. J. Kotti, E. Conzelmann, R. K. Wierenga, J. K. Hiltunen
{Alpha}-Methylacyl-Coa Racemase From Mycobacterium Tuberculosis: Mutational And Structural Characterization Of The Active Site And The Fold
J. Biol. Chem. V. 280 12611 2005
[
close entry info
]
Hetero Components
(2, 16)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
2a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
15
Ligand/Ion
GLYCEROL
2
PO4
1
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:282 , HIS D:282 , HOH D:2345 , HOH D:2483 , HOH D:2542 , HOH D:2543
BINDING SITE FOR RESIDUE PO4 D 1600
02
AC2
SOFTWARE
PRO C:96 , CYS C:99 , ALA C:100 , ASN C:103 , ASP C:104 , LEU C:106 , GLY C:181 , HOH C:2438 , HOH C:2542
BINDING SITE FOR RESIDUE GOL C 2301
03
AC3
SOFTWARE
PRO A:261 , ASN A:263 , ASP A:264 , HOH A:2340 , HOH A:2517 , MET B:216 , TYR B:223 , ILE B:240 , GLN B:262 , ASN B:263 , HOH B:2374
BINDING SITE FOR RESIDUE GOL B 2302
04
AC4
SOFTWARE
MET A:202 , MET A:207 , HOH A:2506 , ASP B:48 , MET B:50 , ALA B:266
BINDING SITE FOR RESIDUE GOL B 2303
05
AC5
SOFTWARE
PRO B:96 , CYS B:99 , ALA B:100 , ASN B:103 , ASP B:104 , LEU B:106 , TYR B:108 , GLY B:181 , GLN B:182 , HOH B:2433 , HOH B:2561
BINDING SITE FOR RESIDUE GOL B 2304
06
AC6
SOFTWARE
PRO C:261 , ASN C:263 , HOH C:2360 , MET D:216 , ILE D:240 , PRO D:242 , GLN D:262 , ASN D:263 , HOH D:2387 , HOH D:2418 , HOH D:2525
BINDING SITE FOR RESIDUE GOL D 2305
07
AC7
SOFTWARE
MET C:216 , TYR C:223 , ILE C:240 , PRO C:242 , GLN C:262 , ASN C:263 , PRO D:261 , ASN D:263 , HOH D:2381 , HOH D:2384 , HOH D:2419 , HOH D:2677
BINDING SITE FOR RESIDUE GOL D 2306
08
AC8
SOFTWARE
HIS C:126 , ASP C:127 , ASP C:156 , HOH C:2390 , HOH C:2525 , HOH C:2539 , HOH C:2662 , LEU D:217
BINDING SITE FOR RESIDUE GOL C 2307
09
AC9
SOFTWARE
MET A:216 , ILE A:240 , PRO A:242 , GLN A:262 , ASN A:263 , HOH A:2433 , PRO B:261 , ASN B:263 , HOH B:2340 , HOH B:2393 , HOH B:2504 , HOH B:2640
BINDING SITE FOR RESIDUE GOL B 2308
10
BC1
SOFTWARE
ILE C:240 , GLY D:17 , HIS D:126 , ASP D:127 , ASN D:152 , ASP D:156 , HOH D:2407 , HOH D:2503 , HOH D:2581
BINDING SITE FOR RESIDUE GOL D 2309
11
BC2
SOFTWARE
PRO D:96 , CYS D:99 , ALA D:100 , ASN D:103 , ASP D:104 , LEU D:106 , GLY D:181 , GLN D:182 , HOH D:2467 , HOH D:2544
BINDING SITE FOR RESIDUE GOL D 2310
12
BC3
SOFTWARE
PRO A:96 , CYS A:99 , ALA A:100 , ASN A:103 , ASP A:104 , LEU A:106 , GLY A:181 , GLN A:182 , VAL A:183 , HOH A:2468 , HOH A:2675
BINDING SITE FOR RESIDUE GOL A 2311
13
BC4
SOFTWARE
HIS B:126 , ASP B:127 , ASP B:156 , HOH B:2400 , HOH B:2573 , HOH B:2621
BINDING SITE FOR RESIDUE GOL B 2312
14
BC5
SOFTWARE
HIS A:126 , ASP A:127 , ASN A:152 , ASP A:156 , HOH A:2377 , HOH A:2516 , HOH A:2678
BINDING SITE FOR RESIDUE GOL A 2313
15
BC6
SOFTWARE
GLU C:310 , HOH C:2511 , HOH C:2608 , ARG D:120
BINDING SITE FOR RESIDUE GOL C 2314
16
BC7
SOFTWARE
ASP C:48 , ALA C:266 , HOH C:2323 , HOH C:2591 , MET D:202 , MET D:207
BINDING SITE FOR RESIDUE GOL C 2315
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1x74a1 (A:2-360)
2a: SCOP_d1x74b_ (B:)
2b: SCOP_d1x74c_ (C:)
2c: SCOP_d1x74d_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
CoA-transferase family III (CaiB/BaiF)
(35)
Superfamily
:
CoA-transferase family III (CaiB/BaiF)
(35)
Family
:
CoA-transferase family III (CaiB/BaiF)
(35)
Protein domain
:
2-methylacyl-CoA racemase Mcr
(7)
Mycobacterium tuberculosis [TaxId: 1773]
(7)
1a
d1x74a1
A:2-360
Protein domain
:
automated matches
(9)
Mycobacterium tuberculosis [TaxId: 1773]
(1)
2a
d1x74b_
B:
2b
d1x74c_
C:
2c
d1x74d_
D:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_CoA_transf_3_1x74D01 (D:57-248)
1b: PFAM_CoA_transf_3_1x74D02 (D:57-248)
1c: PFAM_CoA_transf_3_1x74D03 (D:57-248)
1d: PFAM_CoA_transf_3_1x74D04 (D:57-248)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: CoA_transf_3]
(25)
Family
:
CoA_transf_3
(25)
Mycobacterium tuberculosis
(1)
1a
CoA_transf_3-1x74D01
D:57-248
1b
CoA_transf_3-1x74D02
D:57-248
1c
CoA_transf_3-1x74D03
D:57-248
1d
CoA_transf_3-1x74D04
D:57-248
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (256 KB)
Header - Asym.Unit
Biol.Unit 1 (127 KB)
Header - Biol.Unit 1
Biol.Unit 2 (127 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1X74
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help