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1X6A
Asym. Unit
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Asym.Unit (389 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURES OF THE SECOND LIM DOMAIN OF HUMAN LIM-KINASE 2 (LIMK2)
Authors
:
N. Nameki, A. Sasagawa, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
17 May 05 (Deposition) - 17 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lim-Kinase 2, Zinc Finger Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Nameki, A. Sasagawa, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structures Of The Second Lim Domain Of Human Lim-Kinase 2 (Limk2)
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
[
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]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:18 , CYS A:21 , HIS A:38 , CYS A:41
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:44 , CYS A:47 , CYS A:67 , CYS A:70
BINDING SITE FOR RESIDUE ZN A 401
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_034069 (G4S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_034069
G
35
S
LIMK2_HUMAN
Polymorphism
5997917
A
G
4
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_2 (A:4-16|A:17-75)
2: LIM_DOMAIN_1 (A:4-5|A:18-51)
3: PDZ (A:81-81)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_2
PS50023
LIM domain profile.
LIMK2_HUMAN
10-70
71-131
2
A:4-16
A:17-75
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
LIMK2_HUMAN
12-47
72-105
2
A:4-5
A:18-51
3
PDZ
PS50106
PDZ domain profile.
LIMK2_HUMAN
152-239
1
A:81-81
[
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]
Exons
(5, 5)
Info
All Exons
Exon 1.1d (A:1-1)
Exon 1.2 (A:1-5 (gaps))
Exon 1.4a (A:6-30 (gaps))
Exon 1.4e (A:31-67)
Exon 1.5 (A:67-81 (gaps))
View:
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All Exon Boundaries
1: Boundary -/1.1d
2: Boundary 1.1d/1.2
3: Boundary 1.2/1.4a
4: Boundary 1.4a/1.4e
5: Boundary 1.4e/1.5
6: Boundary 1.5/1.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000331728
1d
ENSE00001951544
chr22:
31608281-31608410
130
LIMK2_HUMAN
1-6
6
1
A:1-1
1
1.2
ENST00000331728
2
ENSE00001768925
chr22:
31621706-31621805
100
LIMK2_HUMAN
6-39
34
1
A:1-5 (gaps)
31
1.4a
ENST00000331728
4a
ENSE00001734907
chr22:
31654277-31654412
136
LIMK2_HUMAN
39-84
46
1
A:6-30 (gaps)
30
1.4e
ENST00000331728
4e
ENSE00001308533
chr22:
31655107-31655216
110
LIMK2_HUMAN
85-121
37
1
A:31-67
37
1.5
ENST00000331728
5
ENSE00001326627
chr22:
31655875-31656063
189
LIMK2_HUMAN
121-184
64
1
A:67-81 (gaps)
41
1.6
ENST00000331728
6
ENSE00001333339
chr22:
31658120-31658225
106
LIMK2_HUMAN
184-219
36
0
-
-
1.7
ENST00000331728
7
ENSE00001317928
chr22:
31658581-31658777
197
LIMK2_HUMAN
220-285
66
0
-
-
1.8
ENST00000331728
8
ENSE00001333474
chr22:
31661932-31662118
187
LIMK2_HUMAN
285-347
63
0
-
-
1.9
ENST00000331728
9
ENSE00001316612
chr22:
31662970-31663056
87
LIMK2_HUMAN
348-376
29
0
-
-
1.10
ENST00000331728
10
ENSE00001328141
chr22:
31663762-31663893
132
LIMK2_HUMAN
377-420
44
0
-
-
1.11
ENST00000331728
11
ENSE00001304549
chr22:
31664130-31664186
57
LIMK2_HUMAN
421-439
19
0
-
-
1.12
ENST00000331728
12
ENSE00001321366
chr22:
31667122-31667187
66
LIMK2_HUMAN
440-461
22
0
-
-
1.13b
ENST00000331728
13b
ENSE00001317796
chr22:
31668516-31668690
175
LIMK2_HUMAN
462-520
59
0
-
-
1.15
ENST00000331728
15
ENSE00001324462
chr22:
31669438-31669493
56
LIMK2_HUMAN
520-538
19
0
-
-
1.16a
ENST00000331728
16a
ENSE00001333337
chr22:
31671137-31671294
158
LIMK2_HUMAN
539-591
53
0
-
-
1.18c
ENST00000331728
18c
ENSE00001342351
chr22:
31674283-31676066
1784
LIMK2_HUMAN
591-638
48
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1x6aa1 (A:8-41)
1b: SCOP_d1x6aa2 (A:42-75)
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Organisms
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Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
Lim domain kinase 2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1x6aa1
A:8-41
1b
d1x6aa2
A:42-75
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1x6aA01 (A:15-76)
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Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Cysteine Rich Protein
(18)
Homologous Superfamily
:
Cysteine Rich Protein
(18)
Human (Homo sapiens)
(7)
1a
1x6aA01
A:15-76
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_LIM_1x6aA01 (A:18-74)
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Clans
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(
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(
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(
)
(
)
Clan
:
no clan defined [family: LIM]
(23)
Family
:
LIM
(23)
Homo sapiens (Human)
(18)
1a
LIM-1x6aA01
A:18-74
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Chain A
Asymmetric Unit 1
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