PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1X69
Asym. Unit
Info
Asym.Unit (383 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURES OF THE SH3 DOMAIN OF HUMAN SRC SUBSTRATE CORTACTIN
Authors
:
M. Sato, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
17 May 05 (Deposition) - 17 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Sh3 Domain, Cttn, Oncogene Ems1, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sato, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:15-73)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
SRC8_HUMAN
492-550
1
A:15-73
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.15 (A:1-7)
Exon 1.16b (A:8-29)
Exon 1.17c (A:29-73)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.14/1.15
2: Boundary 1.15/1.16b
3: Boundary 1.16b/1.17c
4: Boundary 1.17c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000301843
1b
ENSE00001330492
chr11:
70244612-70244720
109
SRC8_HUMAN
-
0
0
-
-
1.2
ENST00000301843
2
ENSE00001119698
chr11:
70251371-70251467
97
SRC8_HUMAN
-
0
0
-
-
1.3a
ENST00000301843
3a
ENSE00002157616
chr11:
70253404-70253490
87
SRC8_HUMAN
1-29
29
0
-
-
1.4a
ENST00000301843
4a
ENSE00001064324
chr11:
70253624-70253697
74
SRC8_HUMAN
30-54
25
0
-
-
1.5
ENST00000301843
5
ENSE00001064322
chr11:
70255937-70256066
130
SRC8_HUMAN
54-97
44
0
-
-
1.7a
ENST00000301843
7a
ENSE00001064330
chr11:
70260648-70260758
111
SRC8_HUMAN
98-134
37
0
-
-
1.8a
ENST00000301843
8a
ENSE00001064328
chr11:
70261769-70261823
55
SRC8_HUMAN
135-153
19
0
-
-
1.9b
ENST00000301843
9b
ENSE00001064327
chr11:
70263119-70263229
111
SRC8_HUMAN
153-190
38
0
-
-
1.10b
ENST00000301843
10b
ENSE00001064326
chr11:
70265852-70265962
111
SRC8_HUMAN
190-227
38
0
-
-
1.10g
ENST00000301843
10g
ENSE00001064329
chr11:
70266506-70266616
111
SRC8_HUMAN
227-264
38
0
-
-
1.11a
ENST00000301843
11a
ENSE00001230269
chr11:
70267576-70267686
111
SRC8_HUMAN
264-301
38
0
-
-
1.11f
ENST00000301843
11f
ENSE00001119696
chr11:
70269046-70269101
56
SRC8_HUMAN
301-319
19
0
-
-
1.12
ENST00000301843
12
ENSE00000737459
chr11:
70271438-70271507
70
SRC8_HUMAN
320-343
24
0
-
-
1.13b
ENST00000301843
13b
ENSE00002141022
chr11:
70275157-70275305
149
SRC8_HUMAN
343-392
50
0
-
-
1.14
ENST00000301843
14
ENSE00000831428
chr11:
70277297-70277386
90
SRC8_HUMAN
393-422
30
0
-
-
1.15
ENST00000301843
15
ENSE00000831427
chr11:
70279207-70279384
178
SRC8_HUMAN
423-482
60
1
A:1-7
7
1.16b
ENST00000301843
16b
ENSE00000831426
chr11:
70279753-70279824
72
SRC8_HUMAN
482-506
25
1
A:8-29
22
1.17c
ENST00000301843
17c
ENSE00001893938
chr11:
70281132-70282681
1550
SRC8_HUMAN
506-550
45
1
A:29-73
45
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1x69a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
automated matches
(114)
Protein domain
:
automated matches
(114)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d1x69a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SH3_1_1x69A01 (A:21-66)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-1x69A01
A:21-66
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (383 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1X69
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help