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1X62
Asym. Unit
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Asym.Unit (393 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE LIM DOMAIN OF CARBOXYL TERMINAL LIM DOMAIN PROTEIN 1
Authors
:
X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
17 May 05 (Deposition) - 17 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Lim Domain, Pdz And Lim Domain Protein 1, Lim Domain Protein Clp-36, C-Terminal Lim Domain Protein 1, Contractile Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of The Lim Domain Of Carboxyl Terminal Lim Domain Protein 1
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:18 , CYS A:21 , HIS A:38 , CYS A:41
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:44 , ASP A:46 , CYS A:47 , CYS A:65 , HIS A:68
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_2 (A:16-73)
2: LIM_DOMAIN_1 (A:18-51)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_2
PS50023
LIM domain profile.
PDLI1_HUMAN
258-317
1
A:16-73
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
PDLI1_HUMAN
260-293
1
A:18-51
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Exons
(3, 3)
Info
All Exons
Exon 1.6b (A:1-1)
Exon 1.7c (A:1-26 (gaps))
Exon 1.8c (A:26-79)
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1: Boundary 1.5b/1.6b
2: Boundary 1.6b/1.7c
3: Boundary 1.7c/1.8c
4: Boundary 1.8c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000329399
1a
ENSE00001306547
chr10:
97050781-97050577
205
PDLI1_HUMAN
1-32
32
0
-
-
1.3
ENST00000329399
3
ENSE00000986618
chr10:
97031541-97031390
152
PDLI1_HUMAN
33-83
51
0
-
-
1.4
ENST00000329399
4
ENSE00000986619
chr10:
97028619-97028535
85
PDLI1_HUMAN
83-111
29
0
-
-
1.5b
ENST00000329399
5b
ENSE00000716582
chr10:
97023820-97023621
200
PDLI1_HUMAN
112-178
67
0
-
-
1.6b
ENST00000329399
6b
ENSE00000933030
chr10:
97007123-97006972
152
PDLI1_HUMAN
178-229
52
1
A:1-1
1
1.7c
ENST00000329399
7c
ENSE00000933031
chr10:
96998442-96998325
118
PDLI1_HUMAN
229-268
40
1
A:1-26 (gaps)
40
1.8c
ENST00000329399
8c
ENSE00001454795
chr10:
96997868-96997329
540
PDLI1_HUMAN
268-329
62
1
A:26-79
54
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1x62a1 (A:43-73)
1b: SCOP_d1x62a2 (A:8-42)
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Protein Domains
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(
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
PDZ and LIM domain protein 1 Elfin
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1x62a1
A:43-73
1b
d1x62a2
A:8-42
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CATH Domains
(0, 0)
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_LIM_1x62A01 (A:18-72)
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(
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Clan
:
no clan defined [family: LIM]
(23)
Family
:
LIM
(23)
Homo sapiens (Human)
(18)
1a
LIM-1x62A01
A:18-72
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Chain A
Asymmetric Unit 1
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