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Asym.Unit (472 KB)
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Models
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Title
:
SOLUTION STRUCTURE OF THE SECOND RRM DOMAIN IN SPLICING FACTOR = 3B
Authors
:
A. Sato, K. Kuwasako, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
16 May 05 (Deposition) - 16 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Structure Genomics, Rrm Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Sato, K. Kuwasako, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of The Second Rrm Domain In Splicing Factor = 3B
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
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1: RRM (-|A:8-85)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
SF3B4_HUMAN
13-91
100-179
1
-
A:8-85
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Exons
(1, 1)
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Exon 1.4b (A:1-96 (gaps))
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1: Boundary 1.3/1.4b
2: Boundary 1.4b/1.5
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000271628
1
ENSE00001360125
chr1:
149900236-149899618
619
SF3B4_HUMAN
1-12
12
0
-
-
1.3
ENST00000271628
3
ENSE00001733707
chr1:
149899186-149899058
129
SF3B4_HUMAN
12-55
44
0
-
-
1.4b
ENST00000271628
4b
ENSE00000959613
chr1:
149898810-149898268
543
SF3B4_HUMAN
55-236
182
1
A:1-96 (gaps)
143
1.5
ENST00000271628
5
ENSE00001043702
chr1:
149897934-149897728
207
SF3B4_HUMAN
236-305
70
0
-
-
1.6
ENST00000271628
6
ENSE00001043720
chr1:
149895906-149895733
174
SF3B4_HUMAN
305-363
59
0
-
-
1.7
ENST00000271628
7
ENSE00001321984
chr1:
149895621-149895209
413
SF3B4_HUMAN
363-424
62
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d1x5ta1 (A:8-90)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Splicing factor 3B subunit 4
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1x5ta1
A:8-90
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CATH Domains
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Pfam Domains
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1a: PFAM_RRM_1_1x5tA01 (A:8-79)
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Clan
:
RRM
(206)
Family
:
RRM_1
(131)
Homo sapiens (Human)
(94)
1a
RRM_1-1x5tA01
A:8-79
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