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Asym. Unit
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Asym.Unit (498 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RRM DOMAIN IN A18 HNRNP
Authors
:
A. Sato, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
16 May 05 (Deposition) - 16 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Structure Genomics, Rrm Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
A. Sato, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of Rrm Domain In A18 Hnrnp
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (A:13-91)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
CIRBP_HUMAN
6-84
1
A:13-91
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Exons
(3, 3)
Info
All Exons
Exon 1.2 (A:8-42)
Exon 1.3a (A:42-77)
Exon 1.3d (A:78-102 (gaps))
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3a
3: Boundary 1.3a/1.3d
4: Boundary 1.3d/1.4
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000320936
1a
ENSE00001643787
chr19:
1269267-1269409
143
CIRBP_HUMAN
-
0
0
-
-
1.2
ENST00000320936
2
ENSE00002173545
chr19:
1270927-1271035
109
CIRBP_HUMAN
1-35
35
1
A:8-42
35
1.3a
ENST00000320936
3a
ENSE00000651429
chr19:
1271139-1271245
107
CIRBP_HUMAN
35-70
36
1
A:42-77
36
1.3d
ENST00000320936
3d
ENSE00000651427
chr19:
1271328-1271466
139
CIRBP_HUMAN
71-117
47
1
A:78-102 (gaps)
29
1.4
ENST00000320936
4
ENSE00001616537
chr19:
1271550-1271631
82
CIRBP_HUMAN
117-144
28
0
-
-
1.5a
ENST00000320936
5a
ENSE00001594551
chr19:
1271980-1272050
71
CIRBP_HUMAN
144-168
25
0
-
-
1.5d
ENST00000320936
5d
ENSE00001672440
chr19:
1272426-1273171
746
CIRBP_HUMAN
168-172
5
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1x5sa1 (A:8-97)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Cold-inducible RNA-binding protein
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1x5sa1
A:8-97
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CATH Domains
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_RRM_1_1x5sA01 (A:15-85)
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Clan
:
RRM
(206)
Family
:
RRM_1
(131)
Homo sapiens (Human)
(94)
1a
RRM_1-1x5sA01
A:15-85
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