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1X5O
Asym. Unit
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Asym.Unit (565 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RRM DOMAIN IN RNA BINDING MOTIF, SINGLE-STRANDED INTERACTING PROTEIN 1
Authors
:
W. Dang, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
16 May 05 (Deposition) - 16 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Structure Genomics, Rrm Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
W. Dang, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of Rrm Domain In Rna Binding Motif, Single-Stranded Interacting Protein 1
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (A:6-20|A:26-108)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
RBMS1_HUMAN
62-135
141-226
2
A:6-20
A:26-108
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Exons
(6, 6)
Info
All Exons
Exon 1.8a (A:1-5)
Exon 1.10 (A:6-19)
Exon 1.11b (A:20-72)
Exon 1.13 (A:72-99)
Exon 1.14b (A:99-110 (gaps))
Exon 1.15 (A:111-114)
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1: Boundary 1.1a/1.8a
2: Boundary 1.8a/1.9a
3: Boundary 1.9a/1.10
4: Boundary 1.10/1.11b
5: Boundary 1.11b/1.13
6: Boundary 1.13/1.14b
7: Boundary 1.14b/1.15
8: Boundary 1.15/1.16a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000348849
1a
ENSE00002037352
chr2:
161350305-161349800
506
RBMS1_HUMAN
1-25
25
0
-
-
1.8a
ENST00000348849
8a
ENSE00001642889
chr2:
161223902-161223727
176
RBMS1_HUMAN
26-84
59
1
A:1-5
5
1.9a
ENST00000348849
9a
ENSE00001794486
chr2:
161174738-161174680
59
RBMS1_HUMAN
84-104
21
0
-
-
1.10
ENST00000348849
10
ENSE00001604602
chr2:
161169758-161169667
92
RBMS1_HUMAN
104-134
31
1
A:6-19
14
1.11b
ENST00000348849
11b
ENSE00001644371
chr2:
161159998-161159841
158
RBMS1_HUMAN
135-187
53
1
A:20-72
53
1.13
ENST00000348849
13
ENSE00001758385
chr2:
161157241-161157162
80
RBMS1_HUMAN
187-214
28
1
A:72-99
28
1.14b
ENST00000348849
14b
ENSE00001173047
chr2:
161143595-161143480
116
RBMS1_HUMAN
214-252
39
1
A:99-110 (gaps)
14
1.15
ENST00000348849
15
ENSE00001708773
chr2:
161141555-161141506
50
RBMS1_HUMAN
253-269
17
1
A:111-114
4
1.16a
ENST00000348849
16a
ENSE00001771628
chr2:
161141379-161141286
94
RBMS1_HUMAN
269-300
32
0
-
-
1.16g
ENST00000348849
16g
ENSE00001681260
chr2:
161137875-161137825
51
RBMS1_HUMAN
301-317
17
0
-
-
1.17b
ENST00000348849
17b
ENSE00001726131
chr2:
161135169-161135059
111
RBMS1_HUMAN
318-354
37
0
-
-
1.17c
ENST00000348849
17c
ENSE00001659062
chr2:
161133894-161133814
81
RBMS1_HUMAN
355-381
27
0
-
-
1.19a
ENST00000348849
19a
ENSE00001745726
chr2:
161132225-161132141
85
RBMS1_HUMAN
382-406
25
0
-
-
1.20g
ENST00000348849
20g
ENSE00001888069
chr2:
161131275-161128662
2614
RBMS1_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1x5oa1 (A:8-108)
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
RNA-binding motif, single-stranded-interacting protein 1, RBMS1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1x5oa1
A:8-108
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1x5oA01 (A:24-109)
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Alpha Beta
(26913)
Architecture
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2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
1x5oA01
A:24-109
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_RRM_1_1x5oA01 (A:28-94)
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Clan
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RRM
(206)
Family
:
RRM_1
(131)
Homo sapiens (Human)
(94)
1a
RRM_1-1x5oA01
A:28-94
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Asymmetric Unit 1
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