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1X5L
Asym. Unit
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Asym.Unit (556 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF EPH RECEPTOR A8 PROTEIN
Authors
:
X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
16 May 05 (Deposition) - 16 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Fn3 Domain, Ephrin Type-A Receptor 8 Precursor/Tyrosine- Protein Kinase Receptor Eek, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. R. Qin, T. Nagashima, F. Hayashi, S. Yokoyama
Solution Structure Of The Second Fn3 Domain Of Eph Receptor A8 Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_022107 (V15M, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_022107
V
444
M
EPHA8_HUMAN
Polymorphism
2295021
A
V
15
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FN3 (-|A:10-105)
;
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
EPHA8_HUMAN
328-438
439-534
1
-
A:10-105
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Exons
(4, 4)
Info
All Exons
Exon 1.5a (A:1-10 (gaps))
Exon 1.6 (A:10-51)
Exon 1.7 (A:52-105)
Exon 1.9 (A:106-111)
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All Exon Boundaries
1: Boundary 1.4/1.5a
2: Boundary 1.5a/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
6: Boundary 1.9/1.10
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000166244
1
ENSE00001156951
chr1:
22890057-22890222
166
EPHA8_HUMAN
1-32
32
0
-
-
1.2
ENST00000166244
2
ENSE00000388454
chr1:
22895782-22895846
65
EPHA8_HUMAN
32-53
22
0
-
-
1.3
ENST00000166244
3
ENSE00001131811
chr1:
22902710-22903373
664
EPHA8_HUMAN
54-275
222
0
-
-
1.4
ENST00000166244
4
ENSE00000759543
chr1:
22912973-22913128
156
EPHA8_HUMAN
275-327
53
0
-
-
1.5a
ENST00000166244
5a
ENSE00001131796
chr1:
22915364-22915699
336
EPHA8_HUMAN
327-439
113
1
A:1-10 (gaps)
84
1.6
ENST00000166244
6
ENSE00000759532
chr1:
22919819-22919943
125
EPHA8_HUMAN
439-480
42
1
A:10-51
42
1.7
ENST00000166244
7
ENSE00000759516
chr1:
22920017-22920179
163
EPHA8_HUMAN
481-535
55
1
A:52-105
54
1.8
ENST00000166244
8
ENSE00000759515
chr1:
22921723-22921816
94
EPHA8_HUMAN
535-566
32
0
-
-
1.9
ENST00000166244
9
ENSE00000759471
chr1:
22922599-22922666
68
EPHA8_HUMAN
566-589
24
1
A:106-111
6
1.10
ENST00000166244
10
ENSE00000560716
chr1:
22923805-22923969
165
EPHA8_HUMAN
589-644
56
0
-
-
1.11
ENST00000166244
11
ENSE00000388463
chr1:
22924169-22924354
186
EPHA8_HUMAN
644-706
63
0
-
-
1.12
ENST00000166244
12
ENSE00000560718
chr1:
22924644-22924705
62
EPHA8_HUMAN
706-726
21
0
-
-
1.13
ENST00000166244
13
ENSE00000388465
chr1:
22925331-22925540
210
EPHA8_HUMAN
727-796
70
0
-
-
1.14
ENST00000166244
14
ENSE00001753689
chr1:
22927154-22927303
150
EPHA8_HUMAN
797-846
50
0
-
-
1.15
ENST00000166244
15
ENSE00000859688
chr1:
22927391-22927581
191
EPHA8_HUMAN
847-910
64
0
-
-
1.16
ENST00000166244
16
ENSE00000388468
chr1:
22927793-22927966
174
EPHA8_HUMAN
910-968
59
0
-
-
1.17
ENST00000166244
17
ENSE00001156943
chr1:
22928120-22930087
1968
EPHA8_HUMAN
968-1005
38
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1x5la1 (A:8-105)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Ephrin type-A receptor 8
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1x5la1
A:8-105
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_fn3_1x5lA01 (A:9-95)
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Clan
:
E-set
(290)
Family
:
fn3
(66)
Homo sapiens (Human)
(52)
1a
fn3-1x5lA01
A:9-95
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Chain A
Asymmetric Unit 1
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