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Asym. Unit
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Asym.Unit (579 KB)
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Models
(20 )
Title
:
THE SOLUTION STRUCTURE OF THE FIFTH FIBRONECTIN TYPE III DOMAIN OF HUMAN NEOGENIN
Authors
:
N. Tochio, A. Sasagawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 May 05 (Deposition) - 15 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rgm Binding, Fibronectin Type Iii Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Tochio, A. Sasagawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
The Solution Structure Of The Fifth Fibronectin Type Iii Domain Of Human Neogenin
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
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View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: FN3 (-|-|-|-|A:11-107|A:109-113)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
NEO1_HUMAN
441-535
541-631
636-731
741-831
856-952
957-1054
2
-
-
-
-
A:11-107
A:109-113
[
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Exons
(6, 6)
Info
All Exons
Exon 1.15 (A:1-2)
Exon 1.16 (A:3-4)
Exon 1.17a (A:4-61 (gaps))
Exon 1.18 (A:62-108)
Exon 1.19 (A:108-113 (gaps))
Exon 1.20 (A:113-113)
View:
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All Exon Boundaries
1: Boundary 1.14/1.15
2: Boundary 1.15/1.16
3: Boundary 1.16/1.17a
4: Boundary 1.17a/1.18
5: Boundary 1.18/1.19
6: Boundary 1.19/1.20
7: Boundary 1.20/1.21
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000339362
1
ENSE00002172289
chr15:
73344875-73345146
272
NEO1_HUMAN
1-44
44
0
-
-
1.2
ENST00000339362
2
ENSE00001675359
chr15:
73408881-73409198
318
NEO1_HUMAN
44-150
107
0
-
-
1.3
ENST00000339362
3
ENSE00001769067
chr15:
73414866-73415141
276
NEO1_HUMAN
150-242
93
0
-
-
1.4
ENST00000339362
4
ENSE00001670832
chr15:
73418758-73418911
154
NEO1_HUMAN
242-293
52
0
-
-
1.5
ENST00000339362
5
ENSE00000697549
chr15:
73428232-73428368
137
NEO1_HUMAN
293-339
47
0
-
-
1.6
ENST00000339362
6
ENSE00001210876
chr15:
73468744-73468898
155
NEO1_HUMAN
339-390
52
0
-
-
1.7
ENST00000339362
7
ENSE00001210873
chr15:
73470648-73470768
121
NEO1_HUMAN
391-431
41
0
-
-
1.8b
ENST00000339362
8b
ENSE00001210869
chr15:
73528688-73528847
160
NEO1_HUMAN
431-484
54
0
-
-
1.9
ENST00000339362
9
ENSE00001110167
chr15:
73536685-73536839
155
NEO1_HUMAN
484-536
53
0
-
-
1.10
ENST00000339362
10
ENSE00000943178
chr15:
73541401-73541549
149
NEO1_HUMAN
536-585
50
0
-
-
1.11
ENST00000339362
11
ENSE00000943179
chr15:
73541924-73542062
139
NEO1_HUMAN
586-632
47
0
-
-
1.12
ENST00000339362
12
ENSE00000943180
chr15:
73545741-73545790
50
NEO1_HUMAN
632-648
17
0
-
-
1.13
ENST00000339362
13
ENSE00000943181
chr15:
73547023-73547170
148
NEO1_HUMAN
649-698
50
0
-
-
1.14
ENST00000339362
14
ENSE00000943182
chr15:
73551107-73551217
111
NEO1_HUMAN
698-735
38
0
-
-
1.15
ENST00000339362
15
ENSE00000943183
chr15:
73552612-73552806
195
NEO1_HUMAN
735-800
66
1
A:1-2
2
1.16
ENST00000339362
16
ENSE00000943184
chr15:
73558657-73558752
96
NEO1_HUMAN
800-832
33
1
A:3-4
2
1.17a
ENST00000339362
17a
ENSE00001164418
chr15:
73562351-73562574
224
NEO1_HUMAN
832-906
75
1
A:4-61 (gaps)
75
1.18
ENST00000339362
18
ENSE00001164373
chr15:
73562657-73562795
139
NEO1_HUMAN
907-953
47
1
A:62-108
47
1.19
ENST00000339362
19
ENSE00001110147
chr15:
73564796-73564903
108
NEO1_HUMAN
953-989
37
1
A:108-113 (gaps)
37
1.20
ENST00000339362
20
ENSE00001322047
chr15:
73566152-73566346
195
NEO1_HUMAN
989-1054
66
1
A:113-113
1
1.21
ENST00000339362
21
ENSE00001210834
chr15:
73567033-73567065
33
NEO1_HUMAN
1054-1065
12
0
-
-
1.22
ENST00000339362
22
ENSE00001210830
chr15:
73570472-73570540
69
NEO1_HUMAN
1065-1088
24
0
-
-
1.23
ENST00000339362
23
ENSE00000885623
chr15:
73575305-73575452
148
NEO1_HUMAN
1088-1137
50
0
-
-
1.24
ENST00000339362
24
ENSE00001319812
chr15:
73580654-73580892
239
NEO1_HUMAN
1137-1217
81
0
-
-
1.25
ENST00000339362
25
ENSE00000373859
chr15:
73581487-73581579
93
NEO1_HUMAN
1217-1248
32
0
-
-
1.27
ENST00000339362
27
ENSE00000697751
chr15:
73590689-73590952
264
NEO1_HUMAN
1248-1336
89
0
-
-
1.28
ENST00000339362
28
ENSE00000697755
chr15:
73593662-73593798
137
NEO1_HUMAN
1336-1381
46
0
-
-
1.29a
ENST00000339362
29a
ENSE00001389723
chr15:
73594954-73597543
2590
NEO1_HUMAN
1382-1408
27
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1x5ja1 (A:8-107)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Neogenin
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1x5ja1
A:8-107
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_fn3_1x5jA01 (A:10-97)
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Clan
:
E-set
(290)
Family
:
fn3
(66)
Homo sapiens (Human)
(52)
1a
fn3-1x5jA01
A:10-97
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