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Asym. Unit
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Asym.Unit (826 KB)
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Models
(20 )
Title
:
THE SOLUTION STRUCTURE OF THE VHS DOMAIN OF HUMAN SIGNAL TRANSDUCING ADAPTOR MOLECULE 2
Authors
:
N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 May 05 (Deposition) - 15 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Vhs Domain, Ubiquitin Binding, Stam2, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding
(Keyword Search:
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Reference
:
N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
The Solution Structure Of The Vhs Domain Of Human Signal Transducing Adaptor Molecule 2
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: VHS (A:23-151)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VHS
PS50179
VHS domain profile.
STAM2_HUMAN
16-144
1
A:23-151
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Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:8-21)
Exon 1.2a (A:21-49)
Exon 1.3 (A:49-74)
Exon 1.4 (A:75-107)
Exon 1.5 (A:108-156)
Exon 1.6 (A:157-163 (gaps))
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2a
3: Boundary 1.2a/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.8c
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000263904
1a
ENSE00001351655
chr2:
153032506-153032117
390
STAM2_HUMAN
1-14
14
1
A:8-21
14
1.2a
ENST00000263904
2a
ENSE00001070314
chr2:
153006743-153006659
85
STAM2_HUMAN
14-42
29
1
A:21-49
29
1.3
ENST00000263904
3
ENSE00000964279
chr2:
153004814-153004739
76
STAM2_HUMAN
42-67
26
1
A:49-74
26
1.4
ENST00000263904
4
ENSE00000778033
chr2:
153004636-153004538
99
STAM2_HUMAN
68-100
33
1
A:75-107
33
1.5
ENST00000263904
5
ENSE00000840594
chr2:
153003822-153003676
147
STAM2_HUMAN
101-149
49
1
A:108-156
49
1.6
ENST00000263904
6
ENSE00000778050
chr2:
153001471-153001402
70
STAM2_HUMAN
150-173
24
1
A:157-163 (gaps)
13
1.8c
ENST00000263904
8c
ENSE00001070312
chr2:
153000527-153000341
187
STAM2_HUMAN
173-235
63
0
-
-
1.9
ENST00000263904
9
ENSE00001070310
chr2:
152992117-152992023
95
STAM2_HUMAN
235-267
33
0
-
-
1.10
ENST00000263904
10
ENSE00000778064
chr2:
152989998-152989916
83
STAM2_HUMAN
267-294
28
0
-
-
1.11
ENST00000263904
11
ENSE00000778067
chr2:
152989774-152989687
88
STAM2_HUMAN
295-324
30
0
-
-
1.12a
ENST00000263904
12a
ENSE00000840600
chr2:
152988682-152988628
55
STAM2_HUMAN
324-342
19
0
-
-
1.13a
ENST00000263904
13a
ENSE00000840601
chr2:
152982893-152982740
154
STAM2_HUMAN
342-393
52
0
-
-
1.14b
ENST00000263904
14b
ENSE00000778080
chr2:
152980449-152980280
170
STAM2_HUMAN
394-450
57
0
-
-
1.15b
ENST00000263904
15b
ENSE00001296024
chr2:
152977316-152973315
4002
STAM2_HUMAN
450-525
76
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d1x5ba_ (A:)
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Class
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All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ENTH/VHS domain
(36)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1x5ba_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1x5bA01 (A:14-148)
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Class
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Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.90, no name defined]
(33)
Human (Homo sapiens)
(20)
1a
1x5bA01
A:14-148
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Pfam Domains
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Chain A
Asymmetric Unit 1
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