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Asym. Unit
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Asym.Unit (800 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE NUDIX DOMAIN FROM HUMAN A/G-SPECIFIC ADENINE DNA GLYCOSYLASE ALPHA-3 SPLICE ISOFORM
Authors
:
T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
15 May 05 (Deposition) - 15 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nudix Domain, Dna Repair, Alpha-3 Isoform, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Hydrolase, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The Nudix Domain From Human A/G-Specific Adenine Dna Glycosylase Alpha-3 Splice Isoform
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_048262 (A22V, chain A, )
2: VAR_018875 (G45D, chain A, )
3: VAR_026049 (P54S, chain A, )
4: VAR_026050 (Q63R, chain A, )
5: VAR_026051 (G151F, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048262
A
370
V
MUTYH_HUMAN
Polymorphism
35352891
A
A
22
V
2
UniProt
VAR_018875
G
393
D
MUTYH_HUMAN
Disease (FAP2)
36053993
A
G
45
D
3
UniProt
VAR_026049
P
402
S
MUTYH_HUMAN
Disease (GASC)
---
A
P
54
S
4
UniProt
VAR_026050
Q
411
R
MUTYH_HUMAN
Disease (GASC)
---
A
Q
63
R
5
UniProt
VAR_026051
S
512
F
MUTYH_HUMAN
Polymorphism
140118273
A
G
151
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: NUDIX (A:16-147)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NUDIX
PS51462
Nudix hydrolase domain profile.
MUTYH_HUMAN
364-495
1
A:16-147
[
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Exons
(6, 6)
Info
All Exons
Exon 1.9c (A:1-5 (gaps))
Exon 1.9i (A:6-45 (gaps))
Exon 1.10 (A:45-90)
Exon 1.11a (A:91-141)
Exon 1.12 (A:142-149)
Exon 1.14g (A:150-155 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.8e/1.9c
2: Boundary 1.9c/1.9i
3: Boundary 1.9i/1.10
4: Boundary 1.10/1.11a
5: Boundary 1.11a/1.12
6: Boundary 1.12/1.14g
7: Boundary 1.14g/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1g
ENST00000372098
1g
ENSE00002161599
chr1:
45806060-45805891
170
MUTYH_HUMAN
1-12
12
0
-
-
1.4a
ENST00000372098
4a
ENSE00001653183
chr1:
45800183-45800063
121
MUTYH_HUMAN
13-53
41
0
-
-
1.5b
ENST00000372098
5b
ENSE00001212332
chr1:
45799266-45799085
182
MUTYH_HUMAN
53-113
61
0
-
-
1.6a
ENST00000372098
6a
ENSE00001141324
chr1:
45798996-45798957
40
MUTYH_HUMAN
114-127
14
0
-
-
1.6f
ENST00000372098
6f
ENSE00001141319
chr1:
45798842-45798769
74
MUTYH_HUMAN
127-151
25
0
-
-
1.6j
ENST00000372098
6j
ENSE00001141314
chr1:
45798631-45798590
42
MUTYH_HUMAN
152-165
14
0
-
-
1.6l
ENST00000372098
6l
ENSE00001141306
chr1:
45798506-45798435
72
MUTYH_HUMAN
166-189
24
0
-
-
1.6p
ENST00000372098
6p
ENSE00001141299
chr1:
45798359-45798246
114
MUTYH_HUMAN
190-227
38
0
-
-
1.7b
ENST00000372098
7b
ENSE00002189978
chr1:
45798160-45798063
98
MUTYH_HUMAN
228-260
33
0
-
-
1.8e
ENST00000372098
8e
ENSE00001141285
chr1:
45797982-45797838
145
MUTYH_HUMAN
260-308
49
0
-
-
1.9c
ENST00000372098
9c
ENSE00001141279
chr1:
45797758-45797695
64
MUTYH_HUMAN
309-330
22
1
A:1-5 (gaps)
6
1.9i
ENST00000372098
9i
ENSE00001767258
chr1:
45797521-45797333
189
MUTYH_HUMAN
330-393
64
1
A:6-45 (gaps)
61
1.10
ENST00000372098
10
ENSE00001689447
chr1:
45797228-45797092
137
MUTYH_HUMAN
393-438
46
1
A:45-90
46
1.11a
ENST00000372098
11a
ENSE00001640025
chr1:
45797006-45796854
153
MUTYH_HUMAN
439-489
51
1
A:91-141
51
1.12
ENST00000372098
12
ENSE00001599383
chr1:
45796229-45796188
42
MUTYH_HUMAN
490-503
14
1
A:142-149
8
1.14g
ENST00000372098
14g
ENSE00001456937
chr1:
45795109-45794914
196
MUTYH_HUMAN
504-546
43
1
A:150-155 (gaps)
12
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1x51a1 (A:8-149)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nudix
(141)
Superfamily
:
Nudix
(141)
Family
:
MutY C-terminal domain-like
(5)
Protein domain
:
A/G-specific adenine DNA glycosylase
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1x51a1
A:8-149
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CATH Domains
(0, 0)
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Pfam Domains
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Chain A
Asymmetric Unit 1
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