PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1X4Q
Asym. Unit
Info
Asym.Unit (469 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF PWI DOMAIN IN U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP3(HPRP3)
Authors
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
14 May 05 (Deposition) - 14 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Pwi Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. He, Y. Muto, M. Inoue, T. Kigawa, M. Shirouzu, T. Terada, S. Yokoyama
Solution Structure Of Pwi Domain In U4/U6 Small Nuclear Ribonucleoprotein Prp3(Hprp3)
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_051286 (K19N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051286
K
12
N
PRPF3_HUMAN
Polymorphism
12736964
A
K
19
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PWI (A:8-86)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PWI
PS51025
PWI domain profile.
PRPF3_HUMAN
1-87
1
A:8-86
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.2 (A:8-56)
Exon 1.3 (A:56-86)
Exon 1.5b (A:87-92)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.5b
4: Boundary 1.5b/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000324862
1a
ENSE00001820718
chr1:
150293925-150294041
117
PRPF3_HUMAN
-
0
0
-
-
1.2
ENST00000324862
2
ENSE00002143988
chr1:
150297353-150297545
193
PRPF3_HUMAN
1-49
49
1
A:8-56
49
1.3
ENST00000324862
3
ENSE00001152898
chr1:
150298209-150298339
131
PRPF3_HUMAN
49-92
44
1
A:56-86
31
1.5b
ENST00000324862
5b
ENSE00001152893
chr1:
150300779-150300925
147
PRPF3_HUMAN
93-141
49
1
A:87-92
6
1.7
ENST00000324862
7
ENSE00001152886
chr1:
150305155-150305238
84
PRPF3_HUMAN
142-169
28
0
-
-
1.8
ENST00000324862
8
ENSE00001152880
chr1:
150305450-150305670
221
PRPF3_HUMAN
170-243
74
0
-
-
1.9c
ENST00000324862
9c
ENSE00001152873
chr1:
150307406-150307712
307
PRPF3_HUMAN
243-345
103
0
-
-
1.10
ENST00000324862
10
ENSE00001152866
chr1:
150310636-150310802
167
PRPF3_HUMAN
346-401
56
0
-
-
1.11
ENST00000324862
11
ENSE00001152858
chr1:
150312874-150312953
80
PRPF3_HUMAN
401-428
28
0
-
-
1.12b
ENST00000324862
12b
ENSE00001152849
chr1:
150315785-150315928
144
PRPF3_HUMAN
428-476
49
0
-
-
1.13a
ENST00000324862
13a
ENSE00001152842
chr1:
150316638-150316737
100
PRPF3_HUMAN
476-509
34
0
-
-
1.14b
ENST00000324862
14b
ENSE00001152834
chr1:
150316910-150317023
114
PRPF3_HUMAN
509-547
39
0
-
-
1.15b
ENST00000324862
15b
ENSE00001152825
chr1:
150318494-150318612
119
PRPF3_HUMAN
547-587
41
0
-
-
1.15c
ENST00000324862
15c
ENSE00001152819
chr1:
150318884-150318967
84
PRPF3_HUMAN
587-615
29
0
-
-
1.16c
ENST00000324862
16c
ENSE00001152810
chr1:
150321633-150321694
62
PRPF3_HUMAN
615-635
21
0
-
-
1.17a
ENST00000324862
17a
ENSE00001850545
chr1:
150325309-150325671
363
PRPF3_HUMAN
636-683
48
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PWI_1x4qA01 (A:15-86)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: PWI]
(2)
Family
:
PWI
(2)
Homo sapiens (Human)
(2)
1a
PWI-1x4qA01
A:15-86
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (469 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1X4Q
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
