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1X3H
Asym. Unit
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Asym.Unit (387 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE LIM DOMAIN OF HUMAN LEUPAXIN
Authors
:
M. Yoneyama, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
09 May 05 (Deposition) - 09 Nov 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Leupaxin, Paxillin Family, Protein-Protein Interaction, Lim Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Yoneyama, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The Lim Domain Of Human Leupaxin
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:18 , CYS A:21 , HIS A:38 , CYS A:41
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:44 , CYS A:47 , CYS A:65 , HIS A:68
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: LIM_DOMAIN_2 (-|A:16-73|A:4-15|A:74-80)
2: LIM_DOMAIN_1 (-|-|A:18-51|A:74-80)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIM_DOMAIN_2
PS50023
LIM domain profile.
LPXN_HUMAN
150-209
268-327
210-267
328-386
3
-
A:16-73
A:4-15
A:74-80
2
LIM_DOMAIN_1
PS00478
LIM zinc-binding domain signature.
LPXN_HUMAN
152-185
211-244
270-303
329-362
2
-
-
A:18-51
A:74-80
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Exons
(4, 4)
Info
All Exons
Exon 1.9 (A:1-3)
Exon 1.10 (A:4-7)
Exon 1.11 (A:7-45 (gaps))
Exon 1.12c (A:46-80 (gaps))
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All Exon Boundaries
1: Boundary 1.8/1.9
2: Boundary 1.9/1.10
3: Boundary 1.10/1.11
4: Boundary 1.11/1.12c
5: Boundary 1.12c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2c
ENST00000395074
2c
ENSE00002146350
chr11:
58343334-58343233
102
LPXN_HUMAN
1-5
5
0
-
-
1.4b
ENST00000395074
4b
ENSE00001322592
chr11:
58338186-58338029
158
LPXN_HUMAN
5-57
53
0
-
-
1.5
ENST00000395074
5
ENSE00000718929
chr11:
58331674-58331628
47
LPXN_HUMAN
58-73
16
0
-
-
1.6a
ENST00000395074
6a
ENSE00000851340
chr11:
58322413-58322314
100
LPXN_HUMAN
73-106
34
0
-
-
1.8
ENST00000395074
8
ENSE00001173996
chr11:
58318705-58318538
168
LPXN_HUMAN
107-162
56
0
-
-
1.9
ENST00000395074
9
ENSE00000718909
chr11:
58317619-58317446
174
LPXN_HUMAN
163-220
58
1
A:1-3
3
1.10
ENST00000395074
10
ENSE00000718901
chr11:
58317340-58317259
82
LPXN_HUMAN
221-248
28
1
A:4-7
4
1.11
ENST00000395074
11
ENSE00000718895
chr11:
58295664-58295516
149
LPXN_HUMAN
248-297
50
1
A:7-45 (gaps)
50
1.12c
ENST00000395074
12c
ENSE00002140275
chr11:
58295196-58294344
853
LPXN_HUMAN
298-386
89
1
A:46-80 (gaps)
41
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1x3ha1 (A:8-42)
1b: SCOP_d1x3ha2 (A:43-74)
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)
Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Superfamily
:
Glucocorticoid receptor-like (DNA-binding domain)
(292)
Family
:
LIM domain
(37)
Protein domain
:
Leupaxin
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1x3ha1
A:8-42
1b
d1x3ha2
A:43-74
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_LIM_1x3hA01 (A:18-73)
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Clans
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Clan
:
no clan defined [family: LIM]
(23)
Family
:
LIM
(23)
Homo sapiens (Human)
(18)
1a
LIM-1x3hA01
A:18-73
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Chain A
Asymmetric Unit 1
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