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1X31
Biol. Unit 1
Info
Asym.Unit (289 KB)
Biol.Unit 1 (282 KB)
Biol.Unit 2 (555 KB)
Biol.Unit 3 (557 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HETEROTETRAMERIC SARCOSINE OXIDASE FROM CORYNEBACTERIUM SP. U-96
Authors
:
K. Ida, T. Moriguchi, H. Suzuki
Date
:
27 Apr 05 (Deposition) - 05 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B,C,D (2x)
Biol. Unit 3: A,B,C,D (2x)
Keywords
:
Heterotetrameric Sarcosine Oxidase, Flavoenzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Ida, T. Moriguchi, H. Suzuki
Crystal Structure Of Heterotetrameric Sarcosine Oxidase Fro Corynebacterium Sp. U-96
Biochem. Biophys. Res. Commun. V. 333 359 2005
[
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: N,N-DIMETHYLGLYCINE (DMGa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3a: FLAVIN MONONUCLEOTIDE (FMNa)
4a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
6a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DMG
1
Ligand/Ion
N,N-DIMETHYLGLYCINE
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
4
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
5
SO4
8
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS D:6 , CYS D:9 , HIS D:59 , CYS D:63
BINDING SITE FOR RESIDUE ZN D 1006
02
AC2
SOFTWARE
GLN A:30 , ALA C:25 , GLY C:26 , GLU C:27 , ARG C:28 , HOH C:3849
BINDING SITE FOR RESIDUE SO4 A 2001
03
AC3
SOFTWARE
ARG A:574 , ALA A:696 , ALA A:697 , THR A:722 , HOH A:3546 , ARG C:176
BINDING SITE FOR RESIDUE SO4 A 2002
04
AC4
SOFTWARE
ARG A:597 , LEU A:631 , THR A:692 , THR A:693
BINDING SITE FOR RESIDUE SO4 A 2003
05
AC5
SOFTWARE
ARG D:83 , HOH D:4063
BINDING SITE FOR RESIDUE SO4 D 2004
06
AC6
SOFTWARE
GLN A:217 , ARG A:219 , HOH A:3062 , VAL C:199 , HOH C:3475 , HOH C:4036
BINDING SITE FOR RESIDUE SO4 C 2005
07
AC7
SOFTWARE
ASN A:651 , GLY A:652 , SER A:847 , LEU A:849 , HOH A:3880
BINDING SITE FOR RESIDUE SO4 A 2006
08
AC8
SOFTWARE
PRO B:8 , GLU B:9 , PHE B:10 , ARG B:181 , HOH B:3488
BINDING SITE FOR RESIDUE SO4 B 2007
09
AC9
SOFTWARE
GLU A:445 , LYS A:446 , ILE A:447 , HOH A:3988
BINDING SITE FOR RESIDUE SO4 A 2008
10
BC1
SOFTWARE
GLY B:27 , GLY B:29 , GLY B:30 , HIS B:31 , GLU B:52 , LYS B:53 , GLY B:59 , ASN B:60 , MET B:61 , ARG B:63 , ASN B:64 , THR B:65 , THR B:66 , ILE B:67 , CYS B:194 , GLU B:195 , VAL B:196 , ALA B:224 , GLY B:225 , ALA B:226 , HIS B:228 , LEU B:232 , LEU B:247 , ALA B:249 , GLY B:326 , GLY B:353 , THR B:354 , GLY B:355 , GLY B:356 , PHE B:357 , LYS B:358 , DMG B:1005 , HOH B:3075 , HOH B:3126 , HOH B:3531 , HOH B:3622
BINDING SITE FOR RESIDUE FAD B 1001
11
BC2
SOFTWARE
GLY A:134 , GLY A:136 , PRO A:137 , ALA A:138 , ASP A:157 , GLU A:158 , ARG A:159 , GLY A:164 , THR A:165 , THR A:202 , VAL A:204 , ALA A:247 , THR A:248 , ALA A:249 , SER A:294 , PHE A:380 , GLY A:416 , ALA A:417 , LEU A:422 , ASP A:423 , THR A:424 , TYR A:553 , HOH A:3001 , HOH A:3002 , HOH A:3026 , HOH A:3135 , HOH A:3199 , HOH A:3281 , HOH A:3354 , HOH A:4037
BINDING SITE FOR RESIDUE NAD A 1002
12
BC3
SOFTWARE
LYS A:509 , ARG A:510 , THR A:516 , GLN A:520 , THR A:548 , ARG A:550 , ALA B:62 , ARG B:63 , ASN B:64 , THR B:66 , HIS B:172 , LYS B:277 , GLU B:279 , ARG B:322 , TRP B:324 , HOH B:3030 , HOH B:3084 , HOH B:3127 , HOH B:3272 , HOH B:3445 , HOH B:3494 , HOH B:3502
BINDING SITE FOR RESIDUE FMN B 1004
13
BC4
SOFTWARE
THR B:65 , ILE B:67 , ARG B:69 , MET B:264 , THR B:354 , LYS B:358 , FAD B:1001
BINDING SITE FOR RESIDUE DMG B 1005
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(7, 7)
Info
all PFAM domains
1a: PFAM_GCV_T_1x31A01 (A:625-845)
2a: PFAM_SoxG_1x31C01 (C:44-193)
3a: PFAM_Fer2_4_1x31A02 (A:19-107)
4a: PFAM_DAO_1x31B01 (B:22-370)
5a: PFAM_FAD_oxidored_1x31A03 (A:129-222)
6a: PFAM_GCV_T_C_1x31A04 (A:850-952)
7a: PFAM_SoxD_1x31D01 (D:3-86)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
FBD
(14)
Family
:
GCV_T
(12)
Corynebacterium sp. U-96
(2)
1a
GCV_T-1x31A01
A:625-845
Family
:
SoxG
(2)
Corynebacterium sp. U-96
(2)
2a
SoxG-1x31C01
C:44-193
Clan
:
Fer2
(69)
Family
:
Fer2_4
(3)
Corynebacterium sp. U-96
(2)
3a
Fer2_4-1x31A02
A:19-107
Clan
:
NADP_Rossmann
(1239)
Family
:
DAO
(25)
Corynebacterium sp. U-96
(2)
4a
DAO-1x31B01
B:22-370
Family
:
FAD_oxidored
(2)
Corynebacterium sp. U-96
(2)
5a
FAD_oxidored-1x31A03
A:129-222
Clan
:
no clan defined [family: GCV_T_C]
(10)
Family
:
GCV_T_C
(10)
Corynebacterium sp. U-96
(2)
6a
GCV_T_C-1x31A04
A:850-952
Clan
:
no clan defined [family: SoxD]
(2)
Family
:
SoxD
(2)
Corynebacterium sp. U-96
(2)
7a
SoxD-1x31D01
D:3-86
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Asym.Unit (289 KB)
Header - Asym.Unit
Biol.Unit 1 (282 KB)
Header - Biol.Unit 1
Biol.Unit 2 (555 KB)
Header - Biol.Unit 2
Biol.Unit 3 (557 KB)
Header - Biol.Unit 3
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