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1X2G
Biol. Unit 3
Info
Asym.Unit (176 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (60 KB)
Biol.Unit 4 (337 KB)
Biol.Unit 5 (115 KB)
Biol.Unit 6 (114 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LIPATE-PROTEIN LIGASE A FROM ESCHERICHIA COLI
Authors
:
K. Fujiwara, S. Toma, K. Okamura-Ikeda, Y. Motokawa, A. Nakagawa, H. Taniguchi
Date
:
23 Apr 05 (Deposition) - 02 Aug 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (2x)
Biol. Unit 5: A,C (1x)
Biol. Unit 6: B (2x)
Keywords
:
Lipoate-Protein Ligase, Lipoic Acid, Protein Acylation, Post-Translational Modification
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Fujiwara, S. Toma, K. Okamura-Ikeda, Y. Motokawa, A. Nakagawa, H. Taniguchi
Crystal Structure Of Lipoate-Protein Ligase A From Escherichia Coli: Determination Of The Lipoic Acid-Binding Site
J. Biol. Chem. V. 280 33645 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
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No.
Name
Count
Type
Full Name
1
MSE
5
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_LPLA_ECOLI_001 (G73S, chain C, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_LPLA_ECOLI_001
*
G
74
S
LPLA_ECOLI
---
---
C
G
73
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BPL_LPL_CATALYTIC (C:28-215)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BPL_LPL_CATALYTIC
PS51733
Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) catalytic domain profile.
LPLA_ECOLI
29-216
1
-
-
C:28-215
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1x2ga2 (A:1-246)
1b: SCOP_d1x2gb2 (B:1-246)
1c: SCOP_d1x2gc2 (C:1-246)
2a: SCOP_d1x2ga1 (A:247-337)
2b: SCOP_d1x2gb1 (B:247-337)
2c: SCOP_d1x2gc1 (C:247-337)
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
LplA-like
(14)
Protein domain
:
Two-domain LplA, N-terminal domain
(4)
Escherichia coli [TaxId: 562]
(4)
1a
d1x2ga2
A:1-246
1b
d1x2gb2
B:1-246
1c
d1x2gc2
C:1-246
Fold
:
SufE/NifU
(22)
Superfamily
:
SufE/NifU
(22)
Family
:
SP1160 C-terminal domain-like
(5)
Protein domain
:
Two-domain LplA, C-terminal domain
(4)
Escherichia coli [TaxId: 562]
(4)
2a
d1x2ga1
A:247-337
2b
d1x2gb1
B:247-337
2c
d1x2gc1
C:247-337
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1x2gC01 (C:1-249)
1b: CATH_1x2gA01 (A:1-249)
1c: CATH_1x2gB01 (B:1-249)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
putative lipoate-protein ligase, domain 1
(7)
Homologous Superfamily
:
putative lipoate-protein ligase, domain 1
(7)
Escherichia coli. Organism_taxid: 562.
(2)
1a
1x2gC01
C:1-249
1b
1x2gA01
A:1-249
1c
1x2gB01
B:1-249
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_Lip_prot_lig_C_1x2gC01 (C:247-332)
1b: PFAM_Lip_prot_lig_C_1x2gC02 (C:247-332)
1c: PFAM_Lip_prot_lig_C_1x2gC03 (C:247-332)
2a: PFAM_BPL_LplA_LipB_1x2gC04 (C:45-157)
2b: PFAM_BPL_LplA_LipB_1x2gC05 (C:45-157)
2c: PFAM_BPL_LplA_LipB_1x2gC06 (C:45-157)
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Clan
:
no clan defined [family: Lip_prot_lig_C]
(2)
Family
:
Lip_prot_lig_C
(2)
Escherichia coli (strain K12)
(2)
1a
Lip_prot_lig_C-1x2gC01
C:247-332
1b
Lip_prot_lig_C-1x2gC02
C:247-332
1c
Lip_prot_lig_C-1x2gC03
C:247-332
Clan
:
tRNA_synt_II
(64)
Family
:
BPL_LplA_LipB
(10)
Escherichia coli (strain K12)
(2)
2a
BPL_LplA_LipB-1x2gC04
C:45-157
2b
BPL_LplA_LipB-1x2gC05
C:45-157
2c
BPL_LplA_LipB-1x2gC06
C:45-157
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Asym.Unit (176 KB)
Header - Asym.Unit
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Biol.Unit 3 (60 KB)
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Biol.Unit 4 (337 KB)
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