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1X1V
Asym. Unit
Info
Asym.Unit (65 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
STRUCTURE OF BANANA LECTIN- METHYL-ALPHA-MANNOSE COMPLEX
Authors
:
D. D. Singh, K. Saikrishnan, P. Kumar, A. Surolia, K. Sekar, M. Vijayan
Date
:
14 Apr 05 (Deposition) - 08 Nov 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
All Beta Sheet Protein, Beta Prism-I Fold, Mannose Specific, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. D. Singh, K. Saikrishnan, P. Kumar, A. Surolia, K. Sekar, M. Vijayan
Unusual Sugar Specificity Of Banana Lectin From Musa Paradisiaca And Its Probable Evolutionary Origin. Crystallographic And Modelling Studies
Glycobiology V. 15 1025 2005
(for further references see the
PDB file header
)
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: HEXANE-1,6-DIOL (HEZa)
1b: HEXANE-1,6-DIOL (HEZb)
1c: HEXANE-1,6-DIOL (HEZc)
1d: HEXANE-1,6-DIOL (HEZd)
1e: HEXANE-1,6-DIOL (HEZe)
1f: HEXANE-1,6-DIOL (HEZf)
2a: O1-METHYL-MANNOSE (MMAa)
2b: O1-METHYL-MANNOSE (MMAb)
2c: O1-METHYL-MANNOSE (MMAc)
2d: O1-METHYL-MANNOSE (MMAd)
2e: O1-METHYL-MANNOSE (MMAe)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEZ
6
Ligand/Ion
HEXANE-1,6-DIOL
2
MMA
5
Ligand/Ion
O1-METHYL-MANNOSE
3
ZN
3
Ligand/Ion
ZINC ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:34 , ASP A:35 , VAL A:36 , ASP A:38 , GLY A:59 , GLY A:60 , TYR A:83 , HOH A:293
BINDING SITE FOR RESIDUE MMA A 801
02
AC2
SOFTWARE
GLY B:34 , ASP B:35 , VAL B:36 , ASP B:38 , GLY B:59 , GLY B:60
BINDING SITE FOR RESIDUE MMA B 802
03
AC3
SOFTWARE
GLY A:14 , GLY A:15 , VAL A:86 , GLY A:129 , ASP A:130 , PHE A:131 , ASP A:133 , HEZ A:813
BINDING SITE FOR RESIDUE MMA A 803
04
AC4
SOFTWARE
GLY B:14 , GLY B:15 , GLY B:129 , ASP B:130 , PHE B:131 , ASP B:133 , HOH B:212
BINDING SITE FOR RESIDUE MMA B 804
05
AC5
SOFTWARE
SER A:33 , THR A:61 , HIS A:63 , PRO A:103 , PHE A:104 , GLY A:105 , ASN A:106 , HOH A:295
BINDING SITE FOR RESIDUE MMA A 805
06
AC6
SOFTWARE
ASP A:41 , HIS A:54 , HOH A:448 , HOH A:449
BINDING SITE FOR RESIDUE ZN A 901
07
AC7
SOFTWARE
HIS A:84 , ASP B:41 , HIS B:54 , HOH B:450
BINDING SITE FOR RESIDUE ZN B 902
08
AC8
SOFTWARE
HIS A:63
BINDING SITE FOR RESIDUE ZN A 903
09
AC9
SOFTWARE
MET A:20 , TYR A:46 , LYS A:49 , GLU A:51 , ARG A:53 , HOH B:455
BINDING SITE FOR RESIDUE HEZ A 811
10
BC1
SOFTWARE
GLY A:75 , LYS A:77 , SER A:95 , SER A:113 , PRO A:115 , HEZ B:814
BINDING SITE FOR RESIDUE HEZ A 812
11
BC2
SOFTWARE
TYR A:83 , HIS A:84 , VAL A:86 , HOH A:220 , MMA A:803 , SER B:58 , HOH B:268
BINDING SITE FOR RESIDUE HEZ A 813
12
BC3
SOFTWARE
HEZ A:812 , GLY B:11 , GLY B:12 , ASN B:13 , PHE B:80 , VAL B:87
BINDING SITE FOR RESIDUE HEZ B 814
13
BC4
SOFTWARE
THR B:50
BINDING SITE FOR RESIDUE HEZ B 815
14
BC5
SOFTWARE
MET B:76 , LYS B:77 , GLY B:93 , SER B:95 , SER B:100 , TYR B:101
BINDING SITE FOR RESIDUE HEZ B 816
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1x1va_ (A:)
1b: SCOP_d1x1vb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Prism I
(50)
Superfamily
:
Mannose-binding lectins
(42)
Family
:
automated matches
(10)
Protein domain
:
automated matches
(10)
Musa acuminata [TaxId: 4641]
(6)
1a
d1x1va_
A:
1b
d1x1vb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1x1vB00 (B:2-141)
1b: CATH_1x1vA00 (A:4-141)
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Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Aligned Prism
(39)
Topology
:
Vitelline Membrane Outer Layer Protein I, subunit A
(39)
Homologous Superfamily
:
[code=2.100.10.30, no name defined]
(33)
Musa acuminata. Organism_taxid: 4641.
(1)
1a
1x1vB00
B:2-141
1b
1x1vA00
A:4-141
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Jacalin_1x1vB01 (B:15-141)
1b: PFAM_Jacalin_1x1vB02 (B:15-141)
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(
)
Clan
:
no clan defined [family: Jacalin]
(35)
Family
:
Jacalin
(35)
Musa acuminata (Banana) (Musa cavendishii)
(4)
1a
Jacalin-1x1vB01
B:15-141
1b
Jacalin-1x1vB02
B:15-141
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (65 KB)
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