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Asym. Unit
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Asym.Unit (121 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI TRANSHYDROGENASE DOMAIN I WITH BOUND NADH
Authors
:
T. Johansson, C. Oswald, A. Pedersen, S. Tornroth, M. Okvist, B. G. Karlsson, J. Rydstrom, U. Krengel
Date
:
31 Mar 05 (Deposition) - 13 Sep 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transhydrogenase, Nad(H)-Binding Domain, Rossmann Fold, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Johansson, C. Oswald, A. Pedersen, S. Tornroth, M. Okvist, B. G. Karlsson, J. Rydstrom, U. Krengel
X-Ray Structure Of Domain I Of The Proton-Pumping Membrane Protein Transhydrogenase From Escherichia Coli
J. Mol. Biol. V. 352 299 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
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No.
Name
Count
Type
Full Name
1
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH B:35 , HOH B:313 , ARG B:1120 , ILE B:1121 , SER B:1122 , GLN B:1125 , GLY B:1172 , GLY B:1174 , VAL B:1175 , ASP B:1195 , THR B:1196 , ARG B:1197 , GLU B:1238 , THR B:1255 , ALA B:1256 , LEU B:1257 , LEU B:1266
BINDING SITE FOR RESIDUE NAD B 1395
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 4)
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1: ALADH_PNT_1 (A:1004-1030,B:1004-1030)
2: ALADH_PNT_2 (A:1170-1195,B:1170-1195)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALADH_PNT_1
PS00836
Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 1.
PNTA_ECOLI
4-30
2
A:1004-1030
B:1004-1030
2
ALADH_PNT_2
PS00837
Alanine dehydrogenase & pyridine nucleotide transhydrogenase signature 2.
PNTA_ECOLI
170-195
2
A:1170-1195
B:1170-1195
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1x15B01 (B:1000-1136,B:1319-1374)
1b: CATH_1x15A01 (A:1001-1136,A:1319-1376)
2a: CATH_1x15A02 (A:1137-1318)
2b: CATH_1x15B02 (B:1137-1318)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1770, no name defined]
(22)
Escherichia coli. Organism_taxid: 562. Strain: dh5alpha.
(3)
1a
1x15B01
B:1000-1136,B:1319-1374
1b
1x15A01
A:1001-1136,A:1319-1376
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Escherichia coli. Organism_taxid: 562. Strain: dh5alpha.
(3)
2a
1x15A02
A:1137-1318
2b
1x15B02
B:1137-1318
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_AlaDh_PNT_N_1x15B01 (B:1004-1137)
1b: PFAM_AlaDh_PNT_N_1x15B02 (B:1004-1137)
2a: PFAM_AlaDh_PNT_C_1x15B03 (B:1146-1311)
2b: PFAM_AlaDh_PNT_C_1x15B04 (B:1146-1311)
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Clan
:
Form_Glyc_dh
(56)
Family
:
AlaDh_PNT_N
(24)
Escherichia coli (strain K12)
(2)
1a
AlaDh_PNT_N-1x15B01
B:1004-1137
1b
AlaDh_PNT_N-1x15B02
B:1004-1137
Clan
:
NADP_Rossmann
(1239)
Family
:
AlaDh_PNT_C
(25)
Escherichia coli (strain K12)
(2)
2a
AlaDh_PNT_C-1x15B03
B:1146-1311
2b
AlaDh_PNT_C-1x15B04
B:1146-1311
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Asym.Unit (121 KB)
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