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1X0C
Biol. Unit 2
Info
Asym.Unit (210 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
IMPROVED CRYSTAL STRUCTURE OF ISOPULLULANASE FROM ASPERGILLUS NIGER ATCC 9642
Authors
:
M. Mizuno, T. Tonozuka, A. Yamamura, Y. Miyasaka, H. Akeboshi, S. Kamit A. Nishikawa, Y. Sakano
Date
:
17 Mar 05 (Deposition) - 13 Jun 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pullulan, Glycoside Hydrolase Family 49, Glycoprotein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Mizuno, A. Koide, A. Yamamura, H. Akeboshi, H. Yoshida, S. Kamitori Y. Sakano, A. Nishikawa, T. Tonozuka
Crystal Structure Of Aspergillus Niger Isopullulanase, A Member Of Glycoside Hydrolase Family 49
J. Mol. Biol. V. 376 210 2008
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
1s: N-ACETYL-D-GLUCOSAMINE (NAGs)
1t: N-ACETYL-D-GLUCOSAMINE (NAGt)
1u: N-ACETYL-D-GLUCOSAMINE (NAGu)
1v: N-ACETYL-D-GLUCOSAMINE (NAGv)
1w: N-ACETYL-D-GLUCOSAMINE (NAGw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(18, 18)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC2 (SOFTWARE)
07: BC3 (SOFTWARE)
08: BC4 (SOFTWARE)
09: BC5 (SOFTWARE)
10: BC6 (SOFTWARE)
11: BC7 (SOFTWARE)
12: BC8 (SOFTWARE)
13: BC9 (SOFTWARE)
14: CC1 (SOFTWARE)
15: CC2 (SOFTWARE)
16: CC3 (SOFTWARE)
17: CC4 (SOFTWARE)
18: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
LEU A:54 , ARG A:114 , ASN A:115 , SER A:118 , HOH A:1238 , HOH A:1260 , HOH A:1364 , HOH A:1639 , HOH A:1643 , GLY B:304 , ASN B:305 , SER B:306
BINDING SITE FOR RESIDUE NAG A 1002
02
AC4
SOFTWARE
ASN A:210 , ASP A:230 , HOH A:1078 , HOH A:1130 , HOH A:1159 , HOH A:1221 , HOH A:1263 , HOH A:1402 , ASN B:138 , GLN B:139
BINDING SITE FOR RESIDUE NAG A 1003
03
AC5
SOFTWARE
ASN A:305 , HOH A:1171 , HOH A:1740 , THR B:40 , GLN B:41 , NAG B:1002 , HOH B:1276 , HOH B:1279 , HOH B:1549
BINDING SITE FOR RESIDUE NAG A 1004
04
AC6
SOFTWARE
ASN A:381 , HOH A:1601 , PHE B:184
BINDING SITE FOR RESIDUE NAG A 1005
05
BC1
SOFTWARE
ALA A:425 , ASN A:503 , HOH A:1409 , HOH A:1591 , HOH A:1733 , HOH B:1092
BINDING SITE FOR RESIDUE NAG A 1009
06
BC2
SOFTWARE
ASN A:535 , HOH A:1273 , ASN B:120 , ASN B:122 , TYR B:136 , HOH B:1253 , HOH B:1385
BINDING SITE FOR RESIDUE NAG A 1010
07
BC3
SOFTWARE
ASN B:24 , PRO B:245 , HOH B:1127 , HOH B:1353
BINDING SITE FOR RESIDUE NAG B 1000
08
BC4
SOFTWARE
ASN B:94 , SER B:164 , GLU B:174 , HOH B:1205 , HOH B:1232 , HOH B:1247 , HOH B:1250
BINDING SITE FOR RESIDUE NAG B 1001
09
BC5
SOFTWARE
NAG A:1004 , HOH A:1598 , HOH A:1710 , LEU B:54 , ARG B:114 , ASN B:115 , SER B:117 , SER B:118 , HOH B:1226 , HOH B:1279 , HOH B:1395
BINDING SITE FOR RESIDUE NAG B 1002
10
BC6
SOFTWARE
VAL A:233 , GLU A:254 , LEU A:256 , PRO A:281 , HOH A:1230 , HOH A:1512 , ASN B:138 , HOH B:1392
BINDING SITE FOR RESIDUE NAG B 1003
11
BC7
SOFTWARE
GLN A:139 , ASN B:210 , ASP B:230 , HOH B:1229 , HOH B:1248 , HOH B:1551
BINDING SITE FOR RESIDUE NAG B 1004
12
BC8
SOFTWARE
GLN A:27 , HIS A:106 , HOH A:1514 , ASN B:305 , HOH B:1313
BINDING SITE FOR RESIDUE NAG B 1005
13
BC9
SOFTWARE
ASN B:381 , HOH B:1188 , HOH B:1322
BINDING SITE FOR RESIDUE NAG B 1006
14
CC1
SOFTWARE
TYR B:440 , ASN B:448 , THR B:451 , HOH B:1224 , HOH B:1293 , HOH B:1489
BINDING SITE FOR RESIDUE NAG B 1007
15
CC2
SOFTWARE
GLY B:452 , ASN B:453 , ASN B:455 , ASP B:514 , ASN B:516
BINDING SITE FOR RESIDUE NAG B 1008
16
CC3
SOFTWARE
ASN B:409 , ASN B:460 , HOH B:1201
BINDING SITE FOR RESIDUE NAG B 1009
17
CC4
SOFTWARE
SER B:464 , ASN B:465 , LYS B:490 , ASN B:491
BINDING SITE FOR RESIDUE NAG B 1010
18
CC5
SOFTWARE
ASN A:197 , SER A:213 , ASN B:503
BINDING SITE FOR RESIDUE NAG B 1011
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1x0cA02 (A:191-564)
1b: CATH_1x0cB02 (B:191-564)
2a: CATH_1x0cA01 (A:19-189)
2b: CATH_1x0cB01 (B:19-189)
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
Pectate Lyase C-like
(105)
Homologous Superfamily
:
Single-stranded right-handed beta-helix, Pectin lyase-like
(73)
Aspergillus niger. Organism_taxid: 5061.
(3)
1a
1x0cA02
A:191-564
1b
1x0cB02
B:191-564
Architecture
:
Sandwich
(5577)
Topology
:
Dex49a from penicillium minioluteum complex, domain 1
(5)
Homologous Superfamily
:
Dex49a from penicillium minioluteum complex, domain 1
(5)
Aspergillus niger. Organism_taxid: 5061.
(2)
2a
1x0cA01
A:19-189
2b
1x0cB01
B:19-189
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_49_1x0cB01 (B:20-563)
1b: PFAM_Glyco_hydro_49_1x0cB02 (B:20-563)
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(
)
Organisms
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)
(
)
Clan
:
Pec_lyase
(42)
Family
:
Glyco_hydro_49
(3)
Aspergillus niger
(3)
1a
Glyco_hydro_49-1x0cB01
B:20-563
1b
Glyco_hydro_49-1x0cB02
B:20-563
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Chain B
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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Asym.Unit (210 KB)
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Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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