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1X0C
Asym. Unit
Info
Asym.Unit (210 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (103 KB)
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(1)
Title
:
IMPROVED CRYSTAL STRUCTURE OF ISOPULLULANASE FROM ASPERGILLUS NIGER ATCC 9642
Authors
:
M. Mizuno, T. Tonozuka, A. Yamamura, Y. Miyasaka, H. Akeboshi, S. Kamit A. Nishikawa, Y. Sakano
Date
:
17 Mar 05 (Deposition) - 13 Jun 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pullulan, Glycoside Hydrolase Family 49, Glycoprotein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Mizuno, A. Koide, A. Yamamura, H. Akeboshi, H. Yoshida, S. Kamitori Y. Sakano, A. Nishikawa, T. Tonozuka
Crystal Structure Of Aspergillus Niger Isopullulanase, A Member Of Glycoside Hydrolase Family 49
J. Mol. Biol. V. 376 210 2008
[
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Hetero Components
(1, 23)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
1s: N-ACETYL-D-GLUCOSAMINE (NAGs)
1t: N-ACETYL-D-GLUCOSAMINE (NAGt)
1u: N-ACETYL-D-GLUCOSAMINE (NAGu)
1v: N-ACETYL-D-GLUCOSAMINE (NAGv)
1w: N-ACETYL-D-GLUCOSAMINE (NAGw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
23
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:24 , PRO A:221 , PRO A:245 , HOH A:1218 , HOH A:1460 , HOH A:1669
BINDING SITE FOR RESIDUE NAG A 1000
02
AC2
SOFTWARE
ASN A:25 , SER A:26 , ASN A:94 , SER A:164 , GLU A:174 , HOH A:1083 , HOH A:1129 , HOH A:1137 , HOH A:1172 , HOH A:1197 , HOH A:1311 , HOH A:1378 , HOH A:1413
BINDING SITE FOR RESIDUE NAG A 1001
03
AC3
SOFTWARE
LEU A:54 , ARG A:114 , ASN A:115 , SER A:118 , HOH A:1238 , HOH A:1260 , HOH A:1364 , HOH A:1639 , HOH A:1643 , GLY B:304 , ASN B:305 , SER B:306
BINDING SITE FOR RESIDUE NAG A 1002
04
AC4
SOFTWARE
ASN A:210 , ASP A:230 , HOH A:1078 , HOH A:1130 , HOH A:1159 , HOH A:1221 , HOH A:1263 , HOH A:1402 , ASN B:138 , GLN B:139
BINDING SITE FOR RESIDUE NAG A 1003
05
AC5
SOFTWARE
ASN A:305 , HOH A:1171 , HOH A:1740 , THR B:40 , GLN B:41 , NAG B:1002 , HOH B:1276 , HOH B:1279 , HOH B:1549
BINDING SITE FOR RESIDUE NAG A 1004
06
AC6
SOFTWARE
ASN A:381 , HOH A:1601 , PHE B:184
BINDING SITE FOR RESIDUE NAG A 1005
07
AC7
SOFTWARE
TYR A:440 , ASN A:448 , THR A:451 , HOH A:1319 , HOH A:1323 , HOH A:1380 , HOH A:1633
BINDING SITE FOR RESIDUE NAG A 1006
08
AC8
SOFTWARE
ASN A:409 , VAL A:410 , LEU A:411 , ASN A:460 , HOH A:1362 , HOH A:1388 , HOH A:1404 , HOH A:1623 , HOH A:1630
BINDING SITE FOR RESIDUE NAG A 1007
09
AC9
SOFTWARE
ASN A:465 , ASN A:491 , HOH A:1156 , HOH A:1625
BINDING SITE FOR RESIDUE NAG A 1008
10
BC1
SOFTWARE
ALA A:425 , ASN A:503 , HOH A:1409 , HOH A:1591 , HOH A:1733 , HOH B:1092
BINDING SITE FOR RESIDUE NAG A 1009
11
BC2
SOFTWARE
ASN A:535 , HOH A:1273 , ASN B:120 , ASN B:122 , TYR B:136 , HOH B:1253 , HOH B:1385
BINDING SITE FOR RESIDUE NAG A 1010
12
BC3
SOFTWARE
ASN B:24 , PRO B:245 , HOH B:1127 , HOH B:1353
BINDING SITE FOR RESIDUE NAG B 1000
13
BC4
SOFTWARE
ASN B:94 , SER B:164 , GLU B:174 , HOH B:1205 , HOH B:1232 , HOH B:1247 , HOH B:1250
BINDING SITE FOR RESIDUE NAG B 1001
14
BC5
SOFTWARE
NAG A:1004 , HOH A:1598 , HOH A:1710 , LEU B:54 , ARG B:114 , ASN B:115 , SER B:117 , SER B:118 , HOH B:1226 , HOH B:1279 , HOH B:1395
BINDING SITE FOR RESIDUE NAG B 1002
15
BC6
SOFTWARE
VAL A:233 , GLU A:254 , LEU A:256 , PRO A:281 , HOH A:1230 , HOH A:1512 , ASN B:138 , HOH B:1392
BINDING SITE FOR RESIDUE NAG B 1003
16
BC7
SOFTWARE
GLN A:139 , ASN B:210 , ASP B:230 , HOH B:1229 , HOH B:1248 , HOH B:1551
BINDING SITE FOR RESIDUE NAG B 1004
17
BC8
SOFTWARE
GLN A:27 , HIS A:106 , HOH A:1514 , ASN B:305 , HOH B:1313
BINDING SITE FOR RESIDUE NAG B 1005
18
BC9
SOFTWARE
ASN B:381 , HOH B:1188 , HOH B:1322
BINDING SITE FOR RESIDUE NAG B 1006
19
CC1
SOFTWARE
TYR B:440 , ASN B:448 , THR B:451 , HOH B:1224 , HOH B:1293 , HOH B:1489
BINDING SITE FOR RESIDUE NAG B 1007
20
CC2
SOFTWARE
GLY B:452 , ASN B:453 , ASN B:455 , ASP B:514 , ASN B:516
BINDING SITE FOR RESIDUE NAG B 1008
21
CC3
SOFTWARE
ASN B:409 , ASN B:460 , HOH B:1201
BINDING SITE FOR RESIDUE NAG B 1009
22
CC4
SOFTWARE
SER B:464 , ASN B:465 , LYS B:490 , ASN B:491
BINDING SITE FOR RESIDUE NAG B 1010
23
CC5
SOFTWARE
ASN A:197 , SER A:213 , ASN B:503
BINDING SITE FOR RESIDUE NAG B 1011
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1x0cA02 (A:191-564)
1b: CATH_1x0cB02 (B:191-564)
2a: CATH_1x0cA01 (A:19-189)
2b: CATH_1x0cB01 (B:19-189)
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Classes
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)
(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
Pectate Lyase C-like
(105)
Homologous Superfamily
:
Single-stranded right-handed beta-helix, Pectin lyase-like
(73)
Aspergillus niger. Organism_taxid: 5061.
(3)
1a
1x0cA02
A:191-564
1b
1x0cB02
B:191-564
Architecture
:
Sandwich
(5577)
Topology
:
Dex49a from penicillium minioluteum complex, domain 1
(5)
Homologous Superfamily
:
Dex49a from penicillium minioluteum complex, domain 1
(5)
Aspergillus niger. Organism_taxid: 5061.
(2)
2a
1x0cA01
A:19-189
2b
1x0cB01
B:19-189
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_49_1x0cB01 (B:20-563)
1b: PFAM_Glyco_hydro_49_1x0cB02 (B:20-563)
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Clans
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(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Pec_lyase
(42)
Family
:
Glyco_hydro_49
(3)
Aspergillus niger
(3)
1a
Glyco_hydro_49-1x0cB01
B:20-563
1b
Glyco_hydro_49-1x0cB02
B:20-563
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