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Asym. Unit
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Asym.Unit (197 KB)
Biol.Unit 1 (192 KB)
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(1)
Title
:
THERMOACTINOMYCES VULGARIS R-47 ALPHA-AMYLASE II (TVA II) MUTATNT R469K
Authors
:
M. Mizuno, K. Ichikawa, T. Tonozuka, A. Ohtaki, Y. Shimura, S. Kamitori, A. Nishikawa, Y. Sakano
Date
:
06 Mar 05 (Deposition) - 22 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha-Amylase, Pullulan, Gh-13, Alpha-Amylase Family, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Mizuno, K. Ichikawa, T. Tonozuka, A. Ohtaki, Y. Shimura, S. Kamitori, A. Nishikawa, Y. Sakano
Mutagenesis And Structural Analysis Of Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:143 , ASP A:145 , ASN A:148 , ASP A:149 , GLY A:169 , ASP A:171
BINDING SITE FOR RESIDUE CA A 601
2
AC2
SOFTWARE
ASN B:143 , ASP B:145 , ASN B:148 , ASP B:149 , GLY B:169 , ASP B:171
BINDING SITE FOR RESIDUE CA B 602
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1wzma2 (A:503-585)
1b: SCOP_d1wzmb2 (B:503-585)
2a: SCOP_d1wzma1 (A:1-120)
2b: SCOP_d1wzmb1 (B:1-120)
3a: SCOP_d1wzma3 (A:121-502)
3b: SCOP_d1wzmb3 (B:121-502)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Maltogenic amylase
(22)
Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
(11)
1a
d1wzma2
A:503-585
1b
d1wzmb2
B:503-585
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Maltogenic amylase, N-terminal domain N
(22)
Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
(11)
2a
d1wzma1
A:1-120
2b
d1wzmb1
B:1-120
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Maltogenic amylase, central domain
(22)
Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
(11)
3a
d1wzma3
A:121-502
3b
d1wzmb3
B:121-502
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1wzmA02 (A:122-242,A:298-502)
1b: CATH_1wzmB02 (B:122-242,B:298-502)
2a: CATH_1wzmA04 (A:503-585)
2b: CATH_1wzmB04 (B:503-585)
3a: CATH_1wzmA01 (A:1-121)
3b: CATH_1wzmB01 (B:1-121)
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Topologies
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Thermoactinomyces vulgaris. Organism_taxid: 2026. Strain: r-47.
(23)
1a
1wzmA02
A:122-242,A:298-502
1b
1wzmB02
B:122-242,B:298-502
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Thermoactinomyces vulgaris. Organism_taxid: 2026. Strain: r-47.
(23)
2a
1wzmA04
A:503-585
2b
1wzmB04
B:503-585
Homologous Superfamily
:
Immunoglobulins
(2282)
Thermoactinomyces vulgaris. Organism_taxid: 2026. Strain: r-47.
(23)
3a
1wzmA01
A:1-121
3b
1wzmB01
B:1-121
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Alpha_amylase_C_1wzmB01 (B:508-583)
1b: PFAM_Alpha_amylase_C_1wzmB02 (B:508-583)
2a: PFAM_Alpha_amylase_1wzmB03 (B:170-466)
2b: PFAM_Alpha_amylase_1wzmB04 (B:170-466)
3a: PFAM_Alpha_amylase_N_1wzmB05 (B:1-117)
3b: PFAM_Alpha_amylase_N_1wzmB06 (B:1-117)
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Clans
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Families
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Organisms
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Clan
:
GHD
(106)
Family
:
Alpha-amylase_C
(82)
Thermoactinomyces vulgaris
(11)
1a
Alpha-amylase_C-1wzmB01
B:508-583
1b
Alpha-amylase_C-1wzmB02
B:508-583
Clan
:
Glyco_hydro_tim
(488)
Family
:
Alpha-amylase
(138)
Thermoactinomyces vulgaris
(15)
2a
Alpha-amylase-1wzmB03
B:170-466
2b
Alpha-amylase-1wzmB04
B:170-466
Clan
:
no clan defined [family: Alpha-amylase_N]
(16)
Family
:
Alpha-amylase_N
(16)
Thermoactinomyces vulgaris
(15)
3a
Alpha-amylase_N-1wzmB05
B:1-117
3b
Alpha-amylase_N-1wzmB06
B:1-117
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Asymmetric Unit 1
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Asym.Unit (197 KB)
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