PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1WYX
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (50 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
THE CRYSTAL STRUCTURE OF THE P130CAS SH3 DOMAIN AT 1.1 A RESOLUTION
Authors
:
M. Wisniewska, B. Bossenmaier, G. Georges, F. Hesse, M. Dangl, K. P. Kuenkele, I. Ioannidis, R. Huber, R. A. Engh
Date
:
17 Feb 05 (Deposition) - 26 Apr 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.14
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta Sheets, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Wisniewska, B. Bossenmaier, G. Georges, F. Hesse, M. Dangl, K. P. Kunkele, I. Ioannidis, R. Huber, R. A. Engh
The 1. 1 A Resolution Crystal Structure Of The P130Cas Sh3 Domain And Ramifications For Ligand Selectivity
J. Mol. Biol. V. 347 1005 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
MG
1
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:195 , HOH A:253 , HOH B:195 , HOH B:209 , HOH B:247 , HOH B:248
BINDING SITE FOR RESIDUE MG B 181
2
AC2
SOFTWARE
GLN A:50 , HOH A:179 , TRP B:42 , GLY B:55 , LEU B:58 , HOH B:234
BINDING SITE FOR RESIDUE EDO A 177
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH3 (B:1-63)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
BCAR1_HUMAN
3-65
1
B:1-63
[
close PROSITE info
]
Exons
(2, 4)
Info
All Exons
Exon 1.4 (A:2-2 | B:1-2)
Exon 1.5 (A:3-69 | B:3-69)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4
ENST00000162330
4
ENSE00001423684
chr16:
75285507-75285369
139
BCAR1_HUMAN
1-4
4
2
A:2-2
B:1-2
1
2
1.5
ENST00000162330
5
ENSE00000874891
chr16:
75276988-75276368
621
BCAR1_HUMAN
5-211
207
2
A:3-69
B:3-69
67
67
1.6
ENST00000162330
6
ENSE00000694765
chr16:
75271242-75271081
162
BCAR1_HUMAN
212-265
54
0
-
-
1.7
ENST00000162330
7
ENSE00000694762
chr16:
75270896-75270780
117
BCAR1_HUMAN
266-304
39
0
-
-
1.8
ENST00000162330
8
ENSE00001143830
chr16:
75269884-75268787
1098
BCAR1_HUMAN
305-670
366
0
-
-
1.9
ENST00000162330
9
ENSE00000694756
chr16:
75267833-75267744
90
BCAR1_HUMAN
671-700
30
0
-
-
1.10b
ENST00000162330
10b
ENSE00001515203
chr16:
75263921-75262928
994
BCAR1_HUMAN
701-870
170
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1wyxa_ (A:)
1b: SCOP_d1wyxb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
automated matches
(114)
Protein domain
:
automated matches
(114)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d1wyxa_
A:
1b
d1wyxb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1wyxA00 (A:2-69)
1b: CATH_1wyxB00 (B:1-69)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
1a
1wyxA00
A:2-69
1b
1wyxB00
B:1-69
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_SH3_1_1wyxB01 (B:7-55)
1b: PFAM_SH3_1_1wyxB02 (B:7-55)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-1wyxB01
B:7-55
1b
SH3_1-1wyxB02
B:7-55
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (54 KB)
Header - Asym.Unit
Biol.Unit 1 (50 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1WYX
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help