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1WXX
Asym. Unit
Info
Asym.Unit (273 KB)
Biol.Unit 1 (138 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TT1595, A PUTATIVE SAM-DEPENDENT METHYLTRANSFERASE FROM THERMUS THERMOPHILLUS HB8
Authors
:
A. A. Pioszak, K. Murayama, N. Nakagawa, A. Ebihara, S. Kuramitsu, M. Sh S. Yokoyama, Riken Structural Genomics/Proteomics Initiative
Date
:
02 Feb 05 (Deposition) - 02 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Thermus Thermophillus, Methyltransferase, Adomet, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Nppsfa, National Project On Protein Structural And Functional Analyses, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. A. Pioszak, K. Murayama, N. Nakagawa, A. Ebihara, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Structures Of A Putative Rna 5-Methyluridine Methyltransferase, Thermus Thermophilus Ttha1280, And Its Complex With S-Adenosyl-L-Homocysteine.
Acta Crystallogr. , Sect. F V. 61 867 2005
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Hetero Components
(3, 28)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
1c: POTASSIUM ION (Kc)
1d: POTASSIUM ION (Kd)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
3f: PHOSPHATE ION (PO4f)
3g: PHOSPHATE ION (PO4g)
3h: PHOSPHATE ION (PO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
K
4
Ligand/Ion
POTASSIUM ION
2
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
3
PO4
8
Ligand/Ion
PHOSPHATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:185 , ARG A:187 , GLN A:190 , THR A:192 , HOH A:1667 , HOH A:1788
BINDING SITE FOR RESIDUE K A 1400
02
AC2
SOFTWARE
ASP B:185 , ARG B:187 , GLN B:190 , THR B:192 , HOH B:1778 , HOH B:1798
BINDING SITE FOR RESIDUE K B 1401
03
AC3
SOFTWARE
ASP C:185 , ARG C:187 , GLN C:190 , THR C:192 , HOH C:1552
BINDING SITE FOR RESIDUE K C 1402
04
AC4
SOFTWARE
ASP D:185 , ARG D:187 , GLN D:190 , THR D:192 , HOH D:1483 , HOH D:1575
BINDING SITE FOR RESIDUE K D 1403
05
AC5
SOFTWARE
ARG A:22 , HIS A:52
BINDING SITE FOR RESIDUE PO4 A 1500
06
AC6
SOFTWARE
ARG A:138 , GLY A:167 , HOH A:1722 , HOH A:1797
BINDING SITE FOR RESIDUE PO4 A 1501
07
AC7
SOFTWARE
ARG A:163 , HOH A:1573 , HOH A:1588 , HOH A:1629 , HOH A:1709 , HOH A:1717 , ARG B:138 , LEU B:166 , GLY B:167 , HOH B:1633
BINDING SITE FOR RESIDUE PO4 A 1502
08
AC8
SOFTWARE
ARG B:22 , HIS B:52
BINDING SITE FOR RESIDUE PO4 B 1503
09
AC9
SOFTWARE
LYS B:292 , HOH B:1715 , ARG D:88
BINDING SITE FOR RESIDUE PO4 B 1504
10
BC1
SOFTWARE
HIS C:347 , ARG C:348 , HOH C:1720 , HOH C:1741
BINDING SITE FOR RESIDUE PO4 C 1505
11
BC2
SOFTWARE
HOH A:1523 , HOH A:1648 , HOH A:1655 , HOH A:1664
BINDING SITE FOR RESIDUE PO4 A 1506
12
BC3
SOFTWARE
ARG A:88 , HOH A:1764 , LYS C:292
BINDING SITE FOR RESIDUE PO4 A 1507
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1wxxa1 (A:1-64)
1b: SCOP_d1wxxb1 (B:1-64)
1c: SCOP_d1wxxc1 (C:1-64)
1d: SCOP_d1wxxd1 (D:1-64)
2a: SCOP_d1wxxa2 (A:65-382)
2b: SCOP_d1wxxb2 (B:65-382)
2c: SCOP_d1wxxc2 (C:65-382)
2d: SCOP_d1wxxd2 (D:65-382)
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)
(
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(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PUA domain-like
(96)
Superfamily
:
PUA domain-like
(96)
Family
:
Hypothetical RNA methyltransferase domain (HRMD)
(6)
Protein domain
:
Hypothetical protein TTHA1280, N-terminal domain
(3)
Thermus thermophilus [TaxId: 274]
(3)
1a
d1wxxa1
A:1-64
1b
d1wxxb1
B:1-64
1c
d1wxxc1
C:1-64
1d
d1wxxd1
D:1-64
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
hypothetical RNA methyltransferase
(7)
Protein domain
:
Hypothetical protein TTHA1280, middle and C-terminal domains
(3)
Thermus thermophilus [TaxId: 274]
(3)
2a
d1wxxa2
A:65-382
2b
d1wxxb2
B:65-382
2c
d1wxxc2
C:65-382
2d
d1wxxd2
D:65-382
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1wxxA03 (A:172-382)
1b: CATH_1wxxB03 (B:172-382)
1c: CATH_1wxxC03 (C:172-382)
1d: CATH_1wxxD03 (D:172-382)
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(2)
1a
1wxxA03
A:172-382
1b
1wxxB03
B:172-382
1c
1wxxC03
C:172-382
1d
1wxxD03
D:172-382
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Methyltrans_SAM_1wxxD01 (D:95-365)
1b: PFAM_Methyltrans_SAM_1wxxD02 (D:95-365)
1c: PFAM_Methyltrans_SAM_1wxxD03 (D:95-365)
1d: PFAM_Methyltrans_SAM_1wxxD04 (D:95-365)
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Clan
:
NADP_Rossmann
(1239)
Family
:
Methyltrans_SAM
(3)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(2)
1a
Methyltrans_SAM-1wxxD01
D:95-365
1b
Methyltrans_SAM-1wxxD02
D:95-365
1c
Methyltrans_SAM-1wxxD03
D:95-365
1d
Methyltrans_SAM-1wxxD04
D:95-365
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Asym.Unit (273 KB)
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