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Biol. Unit 3
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Asym.Unit (252 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (127 KB)
Biol.Unit 3 (127 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TT1595, A PUTATIVE SAM-DEPENDENT METHYLTRANSFERASE FROM THERMUS THERMOPHILLUS HB8
Authors
:
A. A. Pioszak, K. Murayama, N. Nakagawa, A. Ebihara, S. Kuramitsu, M. Sh S. Yokoyama, Riken Structural Genomics/Proteomics Initiative
Date
:
02 Feb 05 (Deposition) - 02 Aug 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Biol. Unit 3: D (2x)
Keywords
:
Thermus Thermophillus, Methyltransferase, Adomet, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase
(Keyword Search:
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Reference
:
A. A. Pioszak, K. Murayama, N. Nakagawa, A. Ebihara, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Structures Of A Putative Rna 5-Methyluridine Methyltransferase, Thermus Thermophilus Ttha1280, And Its Complex With S-Adenosyl-L-Homocysteine.
Acta Crystallogr. , Sect. F V. 61 867 2005
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: HEXANE-1,6-DIOL (HEZa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
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No.
Name
Count
Type
Full Name
1
HEZ
-1
Ligand/Ion
HEXANE-1,6-DIOL
2
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1wxwa1 (A:1-64)
1b: SCOP_d1wxwb1 (B:1-64)
1c: SCOP_d1wxwc1 (C:1-64)
1d: SCOP_d1wxwd1 (D:1-64)
2a: SCOP_d1wxwa2 (A:65-382)
2b: SCOP_d1wxwb2 (B:65-382)
2c: SCOP_d1wxwc2 (C:65-382)
2d: SCOP_d1wxwd2 (D:65-382)
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Class
:
All beta proteins
(24004)
Fold
:
PUA domain-like
(96)
Superfamily
:
PUA domain-like
(96)
Family
:
Hypothetical RNA methyltransferase domain (HRMD)
(6)
Protein domain
:
Hypothetical protein TTHA1280, N-terminal domain
(3)
Thermus thermophilus [TaxId: 274]
(3)
1a
d1wxwa1
A:1-64
1b
d1wxwb1
B:1-64
1c
d1wxwc1
C:1-64
1d
d1wxwd1
D:1-64
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
hypothetical RNA methyltransferase
(7)
Protein domain
:
Hypothetical protein TTHA1280, middle and C-terminal domains
(3)
Thermus thermophilus [TaxId: 274]
(3)
2a
d1wxwa2
A:65-382
2b
d1wxwb2
B:65-382
2c
d1wxwc2
C:65-382
2d
d1wxwd2
D:65-382
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1wxwB03 (B:172-382)
1b: CATH_1wxwC03 (C:172-382)
1c: CATH_1wxwD03 (D:172-382)
1d: CATH_1wxwA03 (A:172-382)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(2)
1a
1wxwB03
B:172-382
1b
1wxwC03
C:172-382
1c
1wxwD03
D:172-382
1d
1wxwA03
A:172-382
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Methyltrans_SAM_1wxwD01 (D:95-365)
1b: PFAM_Methyltrans_SAM_1wxwD02 (D:95-365)
1c: PFAM_Methyltrans_SAM_1wxwD03 (D:95-365)
1d: PFAM_Methyltrans_SAM_1wxwD04 (D:95-365)
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Clan
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NADP_Rossmann
(1239)
Family
:
Methyltrans_SAM
(3)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(2)
1a
Methyltrans_SAM-1wxwD01
D:95-365
1b
Methyltrans_SAM-1wxwD02
D:95-365
1c
Methyltrans_SAM-1wxwD03
D:95-365
1d
Methyltrans_SAM-1wxwD04
D:95-365
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Asym.Unit (252 KB)
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