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Asym. Unit
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Asym.Unit (433 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE TGS DOMAIN FROM HUMAN THREONYL-TRNA SYNTHETASE
Authors
:
E. Chikayama, T. Kigawa, T. Tomizawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
18 Jan 05 (Deposition) - 18 Jul 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Tgs Domain, Threonyl-Trna Synthetase, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Chikayama, T. Kigawa, T. Tomizawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The Tgs Domain From Human Threonyl-Trna Synthetase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_034533 (G1D, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_034533
G
21
D
SYTC_HUMAN
Polymorphism
34334786
A
G
1
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(5, 5)
Info
All Exons
Exon 1.3 (A:1-7 (gaps))
Exon 1.6b (A:8-39)
Exon 1.8c (A:39-80)
Exon 1.9b (A:81-85 (gaps))
Exon 1.10 (A:86-88)
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All Exon Boundaries
1: Boundary 1.1c/1.3
2: Boundary 1.3/1.6b
3: Boundary 1.6b/1.8c
4: Boundary 1.8c/1.9b
5: Boundary 1.9b/1.10
6: Boundary 1.10/1.11a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000265112
1c
ENSE00001948035
chr5:
33440882-33441249
368
SYTC_HUMAN
1-19
19
0
-
-
1.3
ENST00000265112
3
ENSE00001774665
chr5:
33445430-33445510
81
SYTC_HUMAN
20-46
27
1
A:1-7 (gaps)
23
1.6b
ENST00000265112
6b
ENSE00001602051
chr5:
33448647-33448837
191
SYTC_HUMAN
47-110
64
1
A:8-39
32
1.8c
ENST00000265112
8c
ENSE00000735265
chr5:
33453394-33453517
124
SYTC_HUMAN
110-151
42
1
A:39-80
42
1.9b
ENST00000265112
9b
ENSE00000735266
chr5:
33455050-33455171
122
SYTC_HUMAN
152-192
41
1
A:81-85 (gaps)
26
1.10
ENST00000265112
10
ENSE00000804523
chr5:
33455692-33455809
118
SYTC_HUMAN
192-231
40
1
A:86-88
3
1.11a
ENST00000265112
11a
ENSE00001164413
chr5:
33456107-33456171
65
SYTC_HUMAN
232-253
22
0
-
-
1.12
ENST00000265112
12
ENSE00001164409
chr5:
33456254-33456332
79
SYTC_HUMAN
253-279
27
0
-
-
1.13
ENST00000265112
13
ENSE00000735270
chr5:
33457362-33457508
147
SYTC_HUMAN
280-328
49
0
-
-
1.14
ENST00000265112
14
ENSE00000735271
chr5:
33458671-33458769
99
SYTC_HUMAN
329-361
33
0
-
-
1.15a
ENST00000265112
15a
ENSE00000735273
chr5:
33459800-33459966
167
SYTC_HUMAN
362-417
56
0
-
-
1.16a
ENST00000265112
16a
ENSE00000735275
chr5:
33461007-33461169
163
SYTC_HUMAN
417-471
55
0
-
-
1.17
ENST00000265112
17
ENSE00000735276
chr5:
33461263-33461400
138
SYTC_HUMAN
472-517
46
0
-
-
1.18
ENST00000265112
18
ENSE00000735277
chr5:
33461772-33461849
78
SYTC_HUMAN
518-543
26
0
-
-
1.19
ENST00000265112
19
ENSE00000735278
chr5:
33462011-33462111
101
SYTC_HUMAN
544-577
34
0
-
-
1.20
ENST00000265112
20
ENSE00000735279
chr5:
33462204-33462308
105
SYTC_HUMAN
577-612
36
0
-
-
1.21
ENST00000265112
21
ENSE00001082100
chr5:
33463858-33463930
73
SYTC_HUMAN
612-636
25
0
-
-
1.23c
ENST00000265112
23c
ENSE00001082102
chr5:
33466976-33467090
115
SYTC_HUMAN
637-675
39
0
-
-
1.24f
ENST00000265112
24f
ENSE00001887096
chr5:
33467665-33469644
1980
SYTC_HUMAN
675-723
49
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_TGS_1wwtA01 (A:12-72)
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Clan
:
Ubiquitin
(279)
Family
:
TGS
(10)
Homo sapiens (Human)
(1)
1a
TGS-1wwtA01
A:12-72
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Asymmetric Unit 1
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