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Getting 'Exon' information from database.
1WWC
Asym. Unit
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Asym.Unit (24 KB)
Biol.Unit 1 (21 KB)
Biol.Unit 2 (40 KB)
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(1)
Title
:
NT3 BINDING DOMAIN OF HUMAN TRKC RECEPTOR
Authors
:
M. H. Ultsch, C. Wiesmann, L. C. Simmons, J. Henrich, M. Yang, D. Reilly, A. M. De Vos
Date
:
30 Apr 99 (Deposition) - 07 Jul 99 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Trk Receptor, Receptor Tyrosine Kinase, 3D-Domain Swapping, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. H. Ultsch, C. Wiesmann, L. C. Simmons, J. Henrich, M. Yang, D. Reilly S. H. Bass, A. M. De Vos
Crystal Structures Of The Neurotrophin-Binding Domain Of Trka, Trkb And Trkc.
J. Mol. Biol. V. 290 149 1999
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041472 (R306C, chain A, )
2: VAR_041473 (V307L, chain A, )
3: VAR_041474 (L336Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041472
R
306
C
NTRK3_HUMAN
Polymorphism
56386352
A
R
306
C
2
UniProt
VAR_041473
V
307
L
NTRK3_HUMAN
Unclassified
---
A
V
307
L
3
UniProt
VAR_041474
L
336
Q
NTRK3_HUMAN
Unclassified
---
A
L
336
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
Sorry, no Info available
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Exons
(4, 4)
Info
All Exons
Exon 1.9 (A:300-303)
Exon 1.10 (A:303-401)
Exon 1.11 (A:402-402)
Exon 1.12 (A:402-404)
View:
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All Exon Boundaries
1: Boundary 1.8/1.9
2: Boundary 1.9/1.10
3: Boundary 1.10/1.11
4: Boundary 1.11/1.12
5: Boundary 1.12/1.13
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000360948
2b
ENSE00001400416
chr15:
88799661-88799515
147
NTRK3_HUMAN
-
0
0
-
-
1.3
ENST00000360948
3
ENSE00002158319
chr15:
88799399-88799137
263
NTRK3_HUMAN
1-83
83
0
-
-
1.4
ENST00000360948
4
ENSE00001696452
chr15:
88727530-88727456
75
NTRK3_HUMAN
83-108
26
0
-
-
1.5
ENST00000360948
5
ENSE00001608071
chr15:
88726720-88726649
72
NTRK3_HUMAN
108-132
25
0
-
-
1.6
ENST00000360948
6
ENSE00001700495
chr15:
88690634-88690566
69
NTRK3_HUMAN
132-155
24
0
-
-
1.7
ENST00000360948
7
ENSE00001796940
chr15:
88680792-88680635
158
NTRK3_HUMAN
155-208
54
0
-
-
1.8
ENST00000360948
8
ENSE00001663999
chr15:
88679840-88679698
143
NTRK3_HUMAN
208-255
48
0
-
-
1.9
ENST00000360948
9
ENSE00001741518
chr15:
88679271-88679130
142
NTRK3_HUMAN
256-303
48
1
A:300-303
4
1.10
ENST00000360948
10
ENSE00001805730
chr15:
88678628-88678332
297
NTRK3_HUMAN
303-402
100
1
A:303-401
99
1.11
ENST00000360948
11
ENSE00001766954
chr15:
88671965-88671942
24
NTRK3_HUMAN
402-410
9
1
A:402-402
1
1.12
ENST00000360948
12
ENSE00001754979
chr15:
88670457-88670393
65
NTRK3_HUMAN
410-431
22
1
A:402-404
3
1.13
ENST00000360948
13
ENSE00001595872
chr15:
88669604-88669502
103
NTRK3_HUMAN
432-466
35
0
-
-
1.14
ENST00000360948
14
ENSE00001654221
chr15:
88576276-88576088
189
NTRK3_HUMAN
466-529
64
0
-
-
1.17
ENST00000360948
17
ENSE00001134154
chr15:
88483984-88483854
131
NTRK3_HUMAN
529-572
44
0
-
-
1.18
ENST00000360948
18
ENSE00000943684
chr15:
88476415-88476243
173
NTRK3_HUMAN
573-630
58
0
-
-
1.20
ENST00000360948
20
ENSE00000943685
chr15:
88472665-88472422
244
NTRK3_HUMAN
630-711
82
0
-
-
1.21
ENST00000360948
21
ENSE00000943688
chr15:
88428966-88428925
42
NTRK3_HUMAN
712-725
14
0
-
-
1.22
ENST00000360948
22
ENSE00001766468
chr15:
88423659-88423501
159
NTRK3_HUMAN
726-778
53
0
-
-
1.23a
ENST00000360948
23a
ENSE00001134128
chr15:
88420351-88420022
330
NTRK3_HUMAN
779-839
61
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wwca_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
NT3 binding domain of trkC receptor
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1wwca_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1wwcA00 (A:300-404)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1wwcA00
A:300-404
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_I_set_1wwcA01 (A:317-392)
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Clan
:
Ig
(577)
Family
:
I-set
(67)
Homo sapiens (Human)
(50)
1a
I-set-1wwcA01
A:317-392
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Asymmetric Unit 1
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Asym.Unit (24 KB)
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