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1WVR
Biol. Unit 2
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Asym.Unit (45 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A CRISP FAMILY CA-CHANNEL BLOCKER DERIVED FROM SNAKE VENOM
Authors
:
Y. Shikamoto, K. Suto, Y. Yamazaki, T. Morita, H. Mizuno
Date
:
24 Dec 04 (Deposition) - 05 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Cysteine-Rich Secretory Protein, Toxin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Shikamoto, K. Suto, Y. Yamazaki, T. Morita, H. Mizuno
Crystal Structure Of A Crisp Family Ca2+ -Channel Blocker Derived From Snake Venom.
J. Mol. Biol. V. 350 735 2005
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:60 , HIS A:115 , HOH A:423 , HOH A:469 , HOH A:526
BINDING SITE FOR RESIDUE CD A 301
2
AC2
SOFTWARE
GLU A:40 , HOH A:465
BINDING SITE FOR RESIDUE CD A 302
3
AC3
SOFTWARE
ASP A:175 , HOH A:524
BINDING SITE FOR RESIDUE CD A 303
4
AC4
SOFTWARE
GLU A:13 , GLU A:44
BINDING SITE FOR RESIDUE CD A 304
5
AC5
SOFTWARE
GLU A:7 , GLU A:17 , HOH A:455
BINDING SITE FOR RESIDUE CD A 305
6
AC6
SOFTWARE
ASP A:173 , ASN A:218 , LYS A:219 , HOH A:435 , HOH A:518
BINDING SITE FOR RESIDUE CD A 306
7
AC7
SOFTWARE
HIS A:91 , HIS A:94 , HOH A:424 , HOH A:488
BINDING SITE FOR RESIDUE CD A 307
8
AC8
SOFTWARE
ASP A:193 , HOH A:437
BINDING SITE FOR RESIDUE CD A 308
9
AC9
SOFTWARE
ASN A:1 , ASP A:5 , GLU A:188
BINDING SITE FOR RESIDUE CD A 309
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: CRISP_1 (A:114-124)
2: CRISP_2 (A:142-153)
3: SHKT (A:183-216)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CRISP_1
PS01009
CRISP family signature 1.
CRVP_PROFL
133-143
2
A:114-124
2
CRISP_2
PS01010
CRISP family signature 2.
CRVP_PROFL
161-172
2
A:142-153
3
SHKT
PS51670
ShKT domain profile.
CRVP_PROFL
202-235
2
A:183-216
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1wvra1 (A:1-164)
2a: SCOP_d1wvra2 (A:165-221)
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Classes
(
)
(
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Folds
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)
(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
PR-1-like
(14)
Superfamily
:
PR-1-like
(14)
Family
:
PR-1-like
(10)
Protein domain
:
automated matches
(6)
Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]
(1)
1a
d1wvra1
A:1-164
Class
:
Small proteins
(3458)
Fold
:
Crisp domain-like
(13)
Superfamily
:
Crisp domain-like
(13)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Habu snake (Trimeresurus flavoviridis) [TaxId: 88087]
(1)
2a
d1wvra2
A:165-221
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1wvrA01 (A:1-180)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Pathogenesis-related Protein p14a
(12)
Homologous Superfamily
:
Pathogenesis-related Protein p14a
(12)
Trimeresurus flavoviridis. Organism_taxid: 88087. Strain: tokunoshima
(1)
1a
1wvrA01
A:1-180
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Pfam Domains
(0, 0)
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Asym.Unit (45 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
Biol.Unit 2 (78 KB)
Header - Biol.Unit 2
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